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Detailed information on CNT30364210


BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 1e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30141683Sorghum bicolorLolium perenne1326.5787.4127forward
CNT30218447Sorghum bicolorKalanchoe fedtschenkoi7.4723.8689.0473forward
CNT30685650Sorghum bicolorTriticum urartu9.2137.8287.7890forward

Expression of CNT30364210

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MRRKPNINLQQASRCRFTSLLPSIYKTAQMEHILLAGIVVLQYMKSPL*

>peptide 2 (39 aa)
MNVALESMHTTMIQKLCIQNSQIMIQKISENSSHIVLYE*

Sequence

>CNT30364210
GATGGAAGCACACCATAATTTTATGTACAAATTATTCAAAAGTTTTGTAGATTAAAATGCGTATACAGATGTTGATAACTTTGCTACATCCAAATAGCGT
GTAGCATGCGTCGCAAGCCAAACATAAACTTACAGCAAGCATCGCGTTGCCGCTTCACATCTTTGCTGCCTTCGATATATAAAACAGCACAGATGGAGCA
TATATTACTGGCAGGAATTGTAGTTCTACAATATATGAAATCACCATTATAATCAGGGAAGACAACTGATCAGAGTCTACTCCTTCGAGGTGCGGACTGC
GGACACGGTAGAGACCATGGAGTCGACGCCGCACTTGTTGCGAACATTGGAACCCCTGCATATCTTGTAGTATCCGTTCTCCCCCCAGTTCTCGCCCCAC
GAGTTCTTGATGATCCAGTATGGCTTGTCCTTCAGGTTCTGATGTATCACACTGCAACATTTACATCAGGAATTGGGGGTAGTGAGTTCGGATTAATGTG
AGCTAAATCAGGTACCAGTTAACTTCAAGCCGCAAATCCTATTGTAGCAAAAGCCTTGTGCAAAATAAAAATTTTACATCACTGGATCAGATATTGGTTA
TCTGACATGTACAGTGAAATTGCTTCTTGCTGATGAATGTAGCACTAGAGTCTATGCATACAACGATGATTCAAAAACTTTGCATTCAAAATAGCCAAAT
AATGATCCAGAAGATATCAGAAAACAGCTCGCACATAGTTCTCTATGAATAATGATAACAAAAGTCACCTATTCATGGTGAATGATGGGTGACTATTACA
ATAGTAAGTGAACTCATTGCAATCCCCTGTTCCTAGGAGCAAGCCCCACTCAAAAAGTCAGTTGTTCAAGAACAAAGCTAACCATAGAACTGACACGTGA
GGAATGAAATAGCAAATCCTAGGATGTAATCCCTCCGTCCACAAAAGAATGCAATTATGGCATCTGTGCCGGCCAGT