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Detailed information on CNT30363844


BLAST search results

BLAST vs Swiss-Prot:
sp|P49120|H2B4_MAIZE, E-value = 3e-23

BLAST vs NONCODE:
NONORUT000045, E-value = 2e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674495Sorghum bicolorSetaria viridis46.2296.8392.37367forward
CNT30523132Sorghum bicolorSetaria italica54.4172.3692.82432forward
CNT30178569Sorghum bicolorSecale cereale22.5427.6794.41179forward
CNT30108786Sorghum bicolorOryza longistaminata43.710.2586.17347forward

Expression of CNT30363844

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MKIINSNSKSTKSSPQFLPKPNCTQTINPFPAPTSNHYCYHYQY*

Sequence

>CNT30363844
CAAAGTTCAAATTTTGTAGCCCTACAGAATCACATTTCAACACACTGGCAGACAAGTATTTCAACTAGAAACTAGCAAACGGTAACACACTTGTCACAGT
TTGGTATATAGTTGTTCACATACAATTATCATTTCATTGCCAGCAATATGATAGTTACAGGGTAATAGCATCGCATCCTGCCAGAAATCGAATGTAGAAC
AACCACCGCGACTAATGAAGATCATAAACAGTAATTCCAAAAGCACCAAAAGTTCACCACAATTCTTACCAAAACCCAACTGCACCCAGACCATCAATCC
ATTCCCAGCTCCAACATCCAACCACTACTGCTACCACTATCAGTACTAGATAAACTGGGCGACATCTACCAACGCCACCCAGTAGCTACTGCCACCAACC
TAAGATGAGGTGAACTTGGTAACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCC
TGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTAGGTCTCCACCGACTTCTTGGCCTTCTTCTTGCCCTTCTT
GTCGCCGCCCTCCTTGCCGGCAGACTTGCCCGCGGGGAGGCGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGGGGCCTTCTCGGCCGCGGGCTCCTCCTCC
GCGGGCTTCTTCGCCGCCGGCTTCTTCTCCGCCTTGGGCGCCATCGATGCTGTGGGGGTGAGGCTGCGGGGACGGAGGGATTCGCTAGCTAGGT