Detailed information on CNT30363300


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LDN9|PER37_ARATH, E-value = 1e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676209Sorghum bicolorSetaria viridis21.0516.9285100forward
CNT30552443Sorghum bicolorOryza glaberrima4830.3683.33228forward
CNT30471557Sorghum bicolorSaccharum spontaneum46.5333.2883.71221forward
CNT30100031Sorghum bicolorOryza rufipogon24.6329.9289.74117forward
CNT30575036Sorghum bicolorOryza barthii4820.6583.33228forward

Expression of CNT30363300

Peptides detected in this lncRNA

>peptide 1 (38 aa)
SWYYLPASSLLIPPEQSCRLSFEARIIQRCCCCCRRRC*

>peptide 2 (67 aa)
MTLQLSLISPCVPVSTSMLPILTMDLANLLFHLLSLLTNSSTDFLSVALVSSAWSDVKSPRLLVSPT*

>peptide 3 (30 aa)
MRPAAMPLSFLKAAATACCTRASADGHDLL*

Sequence

>CNT30363300
TAGCTGGTACTACCTACCTGCTAGTTCGCTGCTGATTCCTCCTGAGCAGAGTTGTCGGTTGTCATTTGAAGCTCGAATAATCCAGCGCTGCTGCTGCTGC
TGCCGGCGCCGTTGTTGATGACCCTGCAGCTGAGCCTGATCTCCCCCTGCGTGCCCGTGAGCACCTCGATGTTGCCCATCTTGACCATGGACTTGGCGAA
CTTGCTCTTCCACTTGCTGTCGCTCTTGACGAACTCATCGACGGACTTCTTGAGCGTGGCGTTGGTGAGCAGCGCCTGGTCCGACGTGAAGAGCCCGAGG
TTGTTGGTGAGCCCCACGTAGTACTTGTTGTCGAGCACGGCGGATGAGGCCGGCGGCGATGCCGCTGTCGTTCTTGAAGGCGGCAGCCACCGCCTGCTGC
ACCAGGGCCTCCGCCGACGGGCATGACTTGTTGTAGAAGCCGACCTTGAGGCCGGCGGCTATGGCGCTGGCCGGG