Detailed information on CNT30362965


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6AVI0|RSLE2_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONORUT003941, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30249176Sorghum bicolorAvena sativa22.1610085.28632forward
CNT30452219Sorghum bicolorSaccharum spontaneum93.4181.6795.982664forward
CNT30346251Sorghum bicolorEragrostis tef20.5896.8688.76587forward
CNT30596250Sorghum bicolorOryza meridionalis39.6655.9983.021131forward
CNT30107897Sorghum bicolorOryza longistaminata67.5382.7385.11926forward
CNT30100657Sorghum bicolorOryza rufipogon67.5371.6384.841926forward
CNT30576541Sorghum bicolorOryza barthii67.5361.385.151926forward
CNT30580242Sorghum bicolorEchinochloa crusgalli73.8481.4491.222106forward
CNT30497727Sorghum bicolorDigitaria exilis13.9695.6792.21398forward
CNT30557998Sorghum bicolorPanicum hallii42.2948.7590.381206forward

Expression of CNT30362965

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MTTAMANTRLQSFQYLSNLSCISLAMLLKAGSSCPVPFASSS*

>peptide 2 (46 aa)
MNRSNDILCNSIKDMGVAPHNKELSLKHEIVLVGEMISQICTVDIM*

>peptide 3 (48 aa)
QSFSKTGHREHTLKLDNFYSYTRTWTLIHSTKQIEHKTGVQTKYTATS*

>peptide 4 (72 aa)
MSQLFALDQLITMDKFIALDCLIAGDNLVILCHLNFIGSFLSHPDRLAGAELVRYIWEVEVVVVVAEIGNRD*

>peptide 5 (38 aa)
MTTVTSSAEFNTSYTPLRDKYQNRSQSVHNLSLQYTYS*

>peptide 6 (75 aa)
MDIGMAKISRAILERVGNFTVFSFHQFRISNSWIRGVRDSSRYCSSSDFEGWLLWISERYISKSRSPSPVEAGGP*

Sequence

>CNT30362965
CAATCATTCAGTAAAACTGGCCACAGGGAGCACACACTTAAATTAGACAATTTCTACAGCTATACAAGAACATGGACACTAATTCACAGTACAAAACAAA
TTGAACACAAAACGGGGGTTCAAACAAAATACACAGCAACCAGCTGATGCATCCCACGGCTTGTACACGTACATAGCCAACCATGCAAACTCCAACATCA
GACGATACCAGAAAATGATACATAAACTATTACATGACAACAGTGACAAGTTCAGCAGAGTTCAACACAAGTTACACACCTTTACGAGATAAATACCAGA
ATAGATCACAATCAGTTCACAATCTCAGCCTACAATACACCTACAGTTAACTACACTCATAGATACGACAGATGGATAAATAGATTCTTGCTTCCACAAG
GCAGGCAGTGATCAGTGGCGACGACAAACCTACGATCCTTCAGCCTTCACCAGTGCAGAACTCGGTGCCTCGGTGGCAGGTGGTGAATACTGGAGCCAGT
CTTTTGCACAGACAAGTGCTTCCACAATCTCAGGTCGGAGAGAGCTTCTGTAATCATCGAGCATGTGACTTCCTGTTCCAGCAGAGAATATAGAGCTGCC
ACTGCTTACCATGGACATTGGAATGGCCAAGATATCACGGGCCATTTTAGAGAGGGTTGGAAACTTTACTGTGTTTAGCTTCCACCAGTTCAGGATATCA
AACTCCTGGATACGTGGAGTGAGGGATTCATCCAGGTACTGTTCCAGCTCAGATTTCGAGGGCTGGCTACTTTGGATCTCGGAAAGGTACATATCAAAGT
CTAGAAGCCCATCACCAGTGGAAGCAGGCGGGCCTTGACTGTTATTCGCATTGGCTGGTCCATTATTCCCTTCACCTTGCTCAACATAAGCTGGGGTCAG
TGGGAGTGGCTGAGCCACATACTCCTTATACAGCTCATGTACAGCATCATTGACCACCTTAACATACTTTGCGGCCTCAGCCCCATAAATTTTTGAGTAA
CTGAACTCAACAAGCTTCATCTTAAAACGTGGATCCATGACAACAGCAATGGCTAACACGAGGCTGCAATCTTTCCAGTACTTGTCAAACCTCTCATGCA
TATCCTTGGCGATGCTACTGAAAGCGGGATCTTCATGTCCTGTGCCATTTGCTAGCTCTAGCTGAAGTTTCCAAGCTTCATGGAAAAAGATGTTTGCAGT
TGGGTTTGCTGCTGCCATGATGCTATGTGCAGAATCGTATAGCAGTTTCAGGTAATTACAGGCAGCCTCAACTTTCTTCCAATCCTCTGCTGACGGAGCT
TCATTGTAGTTATCATCACATGTTTCTAGTGTAGTGAAAGTCTGCTTATAATCCAAGGCAGCTAACAACATCAGATAAGTGGTGTTCCACTGGGTTGTAA
CATCCAGACAGAGGGTCTTAGTACTGGGAATCTCCAGCTGCAGAGCAATCTCGGCAAACTTCTCTTCACGGGCAGAAGAAGCTTTTATGAACTTTATGCT
TTCACGGATGCTGTATACAACACCATGAATCGAAGCAATGACATCTTGTGCAACAGCATTAAGGATATGGGCGTAGCACCTCACAACAAAGAGCTGTCCC
TTAAGCATGAGATTGTTCTTGTTGGAGAGATGATCTCTCAAATTTGCACTGTAGATATCATGTGAGGAGCAATCATTATCCAATGTGATGGTGAATAGCT
TGTCCTTCATATTCCAGTCAGAAAGGCTCAGGCTAATTGCCTCACTAAGTGCGTTCTCTGAATGAGGAGATGACACCATCATGAAGTTAAGCATCCTTCG
ATGCACTTTCCACTCGGAGTCGATAAACTGCCCTGCAAGTGAAACATACCCAAGAGTCTGACTAGTTGTCCACAATCCTATAGTGAGACTGATCCTTCCA
GGCATAGTGCTGAATGATTGTAGCAGGTTCTCCTTTTCTTTCTGATAAACAGCATACACCTCTCCTTCCATCGTATCAACATCCACAATCTTGAAACGTG
GCTGCAGACTTTCAATAAAAATGGAAAATGCCGGCTGTTGGACAATGTGAAGTGGGTAGTCATGCTGAATGATCATCTTTGCCAAGTGTGAGCAACTGCG
GTCCTGATCAAAAGCAGCATTTGCATAGCCAGTATATCTGTAGCGTCTCTTGGTTGGGCGCTCGATAGTTCCCTCACCATCATTGTCAGTCCCTCCGGTT
GAAGGTAGTGCCAGCCTCTGCTCTTGATTCTTTATCTTTGGACAGGAGCCCAAGGTGATGTGCCTCTTGAGATGACTAGTCCCAGCAATTTTTGAACCAG
AGCTGTAAGCAAAGGTTTGCTTGCAGAGCTTGCAGCAGGCCCTTGTGGCCCCACCGGCGACGGCTTCAATAGTGAAGTGCTCCCATACCAAGGACTTTTT
TCTCCTACGTCTGGTTCCAGTAGTAGGAGGGGTTGCTACCTCAGAAACAACCAGCTCATTTCCTTGAACCAAATCATCACCTTGGGGCAGCTCTTCACCA
TGAGCCAACTCTTCGCCTTGGATCAACTCATCACCATGGACAAATTCATCGCCTTGGATTGCCTCATTGCCGGGGACAATCTCGTTATCTTGTGCCACCT
GAACTTCATTGGCAGTTTCCTCAGCCATCCTGATAGGCTAGCAGGAGCTGAACTTGTGAGATATATCTGGGAGGTGGAGGTGGTGGTGGTGGTGGCCGAG
ATCGGAAATCGGGACTAGCTGCTAGGGCTCGGCCCAAGAAGCGCCGAGCAAGGCCGAGCAGGCGTTGTGGTAGATCTGCTGGTGTTTTTGGGGCGGGGGG
GGAAGGTGGGTGGAAGAGGAGTGGCAGGCAGGTGGTGCCGAGCCGAGGGAAG