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Detailed information on CNT30362913


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694735Sorghum bicolorOryza sativa39.6414.0290.99111forward
CNT30671743Sorghum bicolorSetaria viridis54.2971.3686.84152forward
CNT30520717Sorghum bicolorSetaria italica9034.5287.7252forward
CNT30179895Sorghum bicolorSecale cereale90.3695.1184.98253forward
CNT30290295Sorghum bicolorTriticum aestivum60.3626.0485.8169forward
CNT30385644Sorghum bicolorTriticum turgidum6021.5186.31168forward
CNT30554363Sorghum bicolorOryza glaberrima55.716.586.54156forward
CNT30659718Sorghum bicolorTriticum dicoccoides6526.7685.16182forward
CNT30453977Sorghum bicolorSaccharum spontaneum63.2159.898.31177forward
CNT303454Sorghum bicolorZea mays87.1496.0696.31244forward
CNT30680164Sorghum bicolorTriticum urartu6527.9685.71182forward
CNT30351417Sorghum bicolorEragrostis tef71.7993.4993.03201forward
CNT30370617Sorghum bicolorOryza glumipatula39.6440.3690.99111forward
CNT30148624Sorghum bicolorBrachypodium distachyon604085.71168forward
CNT30581445Sorghum bicolorEchinochloa crusgalli65.7126.5990.22184forward
CNT30496557Sorghum bicolorDigitaria exilis63.5775.7489.89178forward
CNT30117138Sorghum bicolorOryza nivara39.649.2390.99111forward

Expression of CNT30362913

Peptides detected in this lncRNA

>peptide 1 (67 aa)
SSMVLKSLPVSSLRLFFSSLGFEAMTVLRSFWTYGHAFLSMSGFRLMMSCADVFTLAAASAGGSGCR*

Sequence

>CNT30362913
ATCGTCGATGGTGCTGAAGAGCTTGCCGGTGAGCTCCTTGAGGCTCTTCTTCTCCTCCTTGGGCTTTGAAGCGATGACGGTCTTGAGGTCGTTCTGGACG
TACGGCCACGCCTTCTTGTCGATGAGCGGCTTCAGGTTGATGATGTCCTGCGCCGACGTCTTCACCCTCGCCGCCGCCTCCGCCGGTGGCAGCGGCTGCA
GGTAGAATCGATCCTTCAAGGGGAGGCCGAAGTCCCTCGCCTGGTCAGAGTTTTCAGTCCCGGCTGTGTGCCATAGCAAA