Detailed information on CNT30362862


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672185Sorghum bicolorSetaria viridis34.3231.8194.83174forward
CNT30520486Sorghum bicolorSetaria italica34.3233.0894.83174forward
CNT30251998Sorghum bicolorAvena sativa29.3951.7489.93149forward
CNT30659005Sorghum bicolorTriticum dicoccoides28.2150.3590.91143forward
CNT30450016Sorghum bicolorSaccharum spontaneum35.1116.1198.31178forward
CNT30680442Sorghum bicolorTriticum urartu30.1864.8390.85153forward
CNT30352666Sorghum bicolorEragrostis tef30.5719.1695.48155forward
CNT30370761Sorghum bicolorOryza glumipatula26.2313.4191.73133forward
CNT30147603Sorghum bicolorBrachypodium distachyon21.536.5887.16109forward
CNT30496353Sorghum bicolorDigitaria exilis31.3613.996.23159forward

Expression of CNT30362862

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MVAGGEGALLLARLVDGAAGGLVELVLAEPVVAEPSGGLDELPPLGREVLHLPVRRRDEERRVRVQRRRRHGCHGAHPLVKLSFDPDLDLCSCLP

>peptide 2 (29 aa)
TVHHSVCLFFWGVCFCFCFLTRLDEQELS*

>peptide 3 (78 aa)
MARRAASWSWCWRNQWSRNQAVVLTSSHHSGEKSSTCLYAAGMKSGAFGFSDDDAMAATVLILLSSSASILTSISALVS

Sequence

>CNT30362862
ACAGTACATCACTCCGTCTGCCTCTTTTTTTGGGGGGTTTGTTTTTGTTTTTGTTTTCTAACACGGCTGGATGAACAAGAACTGAGCTGAACAGGCGAAA
AACTAGCTACGAGGAGAGAGCACTGGCCGCCTTGGCCCGCCGAATCCCCCCTCTGGTTTTTTTTAGTTGTATACACAGAAAGACTACCTTAATTGCTTGA
GGTTACACTAGGCACAGCAGCCATGGTGGCAGGAGGAGAAGGTGCTCTTCTTCTAGCGAGGCTGGTGGATGGCGCGGCGGGCGGCCTCGTGGAGCTGGTG
CTGGCGGAACCAGTGGTCGCGGAACCAAGCGGTGGTCTTGACGAGCTCCCACCACTCGGGCGAGAAGTCCTCCACCTGCCTGTACGCCGCCGGGATGAAG
AGCGGCGCGTTCGGGTTCAGCGACGACGACGCCATGGCTGCCACGGTGCTCATCCTCTTGTCAAGCTCAGCTTCGATCCTGACCTCGATCTCTGCTCTTG
TCTCCCT