Detailed information on CNT30362705


BLAST search results

BLAST vs Swiss-Prot:
sp|P0C1M0|ATPG_MAIZE, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672189Sorghum bicolorSetaria viridis66.5259.6291.94310forward

Expression of CNT30362705

Peptides detected in this lncRNA

>peptide 1 (39 aa)
WIEILVYCMSRGTRNSVAFVLIRNYRQSGQQENEKKNYI*

>peptide 2 (34 aa)
MRKRIIYSRSPAPHKSQGLRRGLRHRRRSRGSPR*

Sequence

>CNT30362705
TGGATTGAAATTCTTGTGTACTGTATGTCGCGAGGAACACGGAACTCCGTTGCGTTTGTGCTAATCAGGAATTACAGGCAGAGTGGACAGCAGGAAAATG
AGAAAAAGAATTATATATAGCAGGAGCCCCGCACCACACAAGTCACAAGGGCTCAGGCGAGGGCTTCGGCACCGGCGACGATCTCGAGGATCTCCCCGGT
GATCTTGGCCTGGCGCTGTCGGTTGTAGGCGATGGAGAGGTAGAGCGGGAGCAGCGCGTCGAGGATCTGCACGGGGTCCTGCTCGAACTGCACCACGGGG
GAGAAGGGCTGCGTCTCGATCTTCACCTTCTCGCGCTCCACGGTGAGCTTGCCCTCCTTGGTGGTGAGGCGGAAGAGCTCGTCCTCGGTGGCGTCCACGC
AGACGCCGTTGATGTCGCAGATCTCGCCCTTGGGGGACATGGGGAGCAGCGTCTGGATGATGGGGT