Detailed information on CNT30362011


BLAST search results

BLAST vs Swiss-Prot:
sp|F4J0C0|AATPA_ARATH, E-value = 3e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697713Sorghum bicolorOryza sativa27.425.3385.38171forward
CNT30527059Sorghum bicolorEucalyptus grandis21.1510.383.33132forward
CNT30451727Sorghum bicolorSaccharum spontaneum34.4644.3384.19215forward
CNT30139995Sorghum bicolorLolium perenne27.0834.9287.57169forward
CNT30229730Sorghum bicolorAnanas comosus30.6130.7689.53191forward
CNT30688618Sorghum bicolorTriticum urartu30.6110.3487.43191forward

Expression of CNT30362011

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MCLSMRPLRMSAGSSFSTWLVVNTMIRSPPHADHSPSMKLSRPDSVTLLLVSFFSPGLTGPPPFLSLSSSSAAAFFSRAPVRSREQSMS

>peptide 2 (54 aa)
MSGPSSKLLGVRFSATSAGVICTSRSSSPTVSNSGCESTSRYVLARNLKASKPQ*

Sequence

>CNT30362011
AGATACAGGAGAAGTGATTAATTTATTCTACGGGTAAATTTTCAGTAGTTACTGCACTACTGTGGAAGTACAATCCTGAATACACTGAAAATTACTACTG
TTTCTCCTCATCTTTGCTGGTTCTGTTCATCGCCTCCGCTCGCCTTCTCCTTCTCCTTGGCCTCTTCCACAGCGCCCTCACCATGTCCGGGCCGTCGTCC
AAGCTCTTGGGCGTGAGGTTCTCGGCGACGTCGGCCGGCGTCATCTGCACCTCCCGGAGCAGCTCGCCGACGGTGTCGAACAGCGGGTGTGAGTCCACGT
CGAGGTACGTCTTGGCCAGGAACTTGAAGGCCTCGAAGCCGCAGTAGGACATCTCGATGTGCTTGTCCATGCGGCCCCTCCGGATGAGCGCCGGGTCCAG
CTTCTCGACGTGGTTGGTGGTGAACACGATGATCCGCTCGCCGCCGCACGCCGACCACAGCCCGTCGATGAAGTTGAGCAGGCCCGACAGCGTCACCTTG
CTGCTGGTGTCCTTCTTCTCGCCGGGCCTGACGGGGCCGCCGCCCTTCTTGTCCTTGTCGTCCTCCTCCGCCGCCGCCTTCTTCTCGCGCGCGCCGGTGA
GGTCGAGGGAGCAGTCGATGTCCT