Detailed information on CNT30361778


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 2e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677834Sorghum bicolorSetaria viridis27.0541.7794.95198forward
CNT30522550Sorghum bicolorSetaria italica57.6588.6691.94422forward
CNT30639185Sorghum bicolorNymphaea colorata32.5155.7483.19238forward
CNT30515406Sorghum bicolorJuglans regia17.0824.6181.6125forward
CNT30376473Sorghum bicolorArabidopsis thaliana26.9128.0678.68197forward
CNT30525887Sorghum bicolorPhaseolus vulgaris12.1623.886.5289forward
CNT30460Sorghum bicolorZea mays37.752.5794.57276forward
CNT30596768Sorghum bicolorOryza meridionalis30.7428.7490.67225forward
CNT30358483Sorghum bicolorLactuca sativa20.3622.7882.55149forward
CNT30579356Sorghum bicolorEchinochloa crusgalli59.8450.8189.95438forward
CNT30558912Sorghum bicolorPanicum hallii7.5121.498.1855forward

Expression of CNT30361778

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MGDGVLGSSCGGTKPLGASSVTAAAAGPSSDARSGAGPRDDGIASCELSCRGFAQAAASRWRTAGK

>peptide 2 (37 aa)
MSKDSLPVNLTSMGLTFLPMLRKFCPTPCLPALTFSG*

Sequence

>CNT30361778
CAAATGAACATCATGTACATATAATCCCACGCTGCGCCTCCACGGTCACCAAGAAGACTTGATAATAAAATTACACATGGATCATCTATCAAACCATGCA
TGCATGCATGGCGCCACCAGCAGCTAACTTATAGTAATAATTCATATAAGAAGAACACGCAAGTCCTTTAAGCATGCGACGGAGGATTAGATGTCGAAGG
ATTCCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGCCCAACGCCCTGCCTGCCGGCGTTGACCTTCTCCGG
GTAGACGCCGTCCTTGGGAACTGGTAGTTGATCTTGTACTTGGAGCGCAGCCTGGTGCCGAGCGCCAGGCACTGCTCCTTGCGCGCCAGCTTCAGGAGGT
TTGGACCCTCCCGCATGATGGCGGCGCCGCCCGTGGGCATCTCGAACACCTGCTCCTTCGGGGACGTCCACGTGATCACGTAGAACTCCTCCACCTGCGC
CTTCCGGAGCAGCCCGCCCGTGCTGCCGCCGAAGATGGGCGACGGCGTGTTGGGGTCCAGCTGCGGGGGCACGAAACCCTTGGGGGCCTCCTCAGTCACC
GCCGCCGCCGCCGGTCCGTCGTCGGACGCGCGGAGCGGGGCCGGACCGCGGGACGACGGCATCGCGAGCTGCGAGCTCAGCTGCCGTGGCTTCGCCCAGG
CGGCCGCCAGCAGGTGGCGCACGGCGGGCAAG