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Detailed information on CNT30361641


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10QA5|D14_ORYSJ, E-value = 7e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Sorghum bicolorOryza sativa17.1622.894.06202forward
CNT30678417Sorghum bicolorSetaria viridis14.150.396.99166forward
CNT30522336Sorghum bicolorSetaria italica10.1144.9196.64119forward
CNT30296550Sorghum bicolorTriticum aestivum7.9922.4994.6894forward
CNT30552945Sorghum bicolorOryza glaberrima17.1624.7994.06202forward
CNT30439764Sorghum bicolorAegilops tauschii15.1238.1289.89178forward
CNT30447830Sorghum bicolorSaccharum spontaneum10.3721.33100122forward
CNT301613Sorghum bicolorZea mays16.9935.0997200forward
CNT30683907Sorghum bicolorTriticum urartu17.4231.291.22205forward
CNT30369879Sorghum bicolorOryza glumipatula17.1628.1394.06202forward
CNT30116295Sorghum bicolorOryza nivara18.5223.1492.66218forward

Expression of CNT30361641

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MPSTPRRSVLKTVRQTWREMSGRMLKRVRLNSCTAAGTSAPTASGAIPIMAETECPTKAHRGMRSASSMARRS*

>peptide 2 (86 aa)
MSETRTGGGTDYGEAEASPGSVLYSGWSRGHGLPLPCFSLLSLSESRASFPPSSSLLISGWLSLSACTLLYSSISLPLLLGLVREGA

>peptide 3 (49 aa)
MGQRQDAEYQYYCSAPVKSKKRKSGTRTSCTTTVMARTGTANGATRAIF*

Sequence

>CNT30361641
GTCAGAAGATCCGCCGGGGCGCCAGCTGATCCCTATCTCATTCTCATATCATAGCCGTAAATAAACTAGCAGCAGCAGTAATAAAAAAAGTTACAGCCTC
CTCTAGTCGTCCTGCTGCCGTTGCAGATGGGACAAAGGCAAGATGCGGAGTACCAGTACTACTGCTCGGCTCCAGTAAAAAGTAAAAAAAGGAAATCGGG
TACCAGAACAAGTTGTACTACTACAGTCATGGCGCGCACAGGCACAGCAAACGGCGCGACTCGCGCCATTTTTTGATTCTCTGCATGGGCAGGGGTAAAT
CGAGGCGGTAAAAAAATACCGTTCACAATCAGGCAGGCGGTAGGCGGCGACGGAGGCCGGGACGGAGACGTCGCGGGTGGTCTGCACCACCACGCAGGGG
GAGCGCACCATGCCCAGCACGCCGCGGAGGTCGGTGTTGAAGACGGTGCGGCAGACGTGGAGGGAGATGTCCGGCCGCATGTTGAAGAGGGTGCGGCTGA
ACTCCTGCACCGCCGCGGGCACGTCCGCGCCCACCGCCAGCGGGGCGATCCCGATCATGGCGGAGACGGAGTGTCCGACGAAGGCGCATCGCGGGATGCG
GAGCGCGTCGAGTATGGCGAGGAGGTCGTAGAGCACCACGCGGTGGTCGCGGGTGAGGTACGGGAGCACGCGGCTCCACGCCGACTGGTCCGTCCCGAAC
CCGTGGGACAGCACCACGACGCGGTCGCCGGTGCCCACGACCCGCACGTTGAGGATCTGCAGCAGCTTGGCGCCGCTCGGCCCGCCGGCGCCGGCGCCGC
TGCCCGCCGCCGCCGCGCCGCCCCCGACCATCGCGGCGTCGGAGCTGCTGGACGACGCCGGCGCCGCGGAGCTGCCGCTGCCGCTGGTGGGGCTTGGTGG
GTGCGTGGACCGAAGCATGAGTGAGACCAGGACGGGTGGGGGGACGGACTACGGGGAAGCAGAGGCGTCGCCCGGGTCGGTCTTATATAGCGGCTGGAGC
AGAGGCCATGGGCTGCCCCTGCCCTGCTTCTCTCTTCTCTCCCTCTCTGAGAGCAGAGCAAGCTTTCCTCCGTCCTCCTCCCTTTTGATCTCCGGCTGGC
TCTCCCTCTCCGCGTGCACCCTGCTTTATTCCTCCATCTCTCTCCCCCTCCTCTTGGGTTTGGTGCGGGAGGGAGCT