« Back to Sorghum bicolor search


Detailed information on CNT30361538


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 9e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695521Sorghum bicolorOryza sativa55.2634.9992.16268forward
CNT30630495Sorghum bicolorVigna unguiculata50.7243.3980.08246forward
CNT30710271Sorghum bicolorGlycine max50.148.881.48243forward
CNT30395090Sorghum bicolorTriticum turgidum55.2624.9388.06268forward
CNT3089114Sorghum bicolorVigna radiata50.125.2680.66243forward
CNT30554655Sorghum bicolorOryza glaberrima55.2630.6392.16268forward
CNT30440464Sorghum bicolorAegilops tauschii55.2632.2988.43268forward
CNT30246994Sorghum bicolorAvena sativa55.2632.191.04268forward
CNT30446699Sorghum bicolorSaccharum spontaneum85.7746.3891.35416forward
CNT30971Sorghum bicolorZea mays58.5649.8294.72284forward
CNT30344027Sorghum bicolorEragrostis tef50.3130.294.26244forward
CNT30619829Sorghum bicolorCajanus cajan51.1325.1584.68248forward
CNT30370811Sorghum bicolorOryza glumipatula55.2633.8892.16268forward
CNT30148662Sorghum bicolorBrachypodium distachyon34.0221.4392.73165forward
CNT30577354Sorghum bicolorOryza barthii55.2632.692.16268forward
CNT30117312Sorghum bicolorOryza nivara55.2634.0192.16268forward
CNT30174623Sorghum bicolorVigna angularis22.4712.7981.65109forward
CNT30113105Sorghum bicolorFicus carica50.9330.8888.66247forward

Expression of CNT30361538

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MGDGVLGSSCGGTKPLGASSVTAAAAGPSSDARSGAGPRDDGIASCELSCRGFAQAAASRWRVAAESFLEGRR*

Sequence

>CNT30361538
TGGTTGGGTGAGACGCGGTAGAACTGGTAGTTGATCTTGTACTTGGAGCGCAGCCTGGTGCCGAGCGCCAGGCACTGCTCCTTGCGCGCCAGCTTCAGGA
GGTTTGGACCCTCCCGCATGATGGCGGCGCCGCCCGTGGGCATCTCGAACACCTGCTCCTTCGGGGACGTCCACGTGATCACGTAGAACTCCTCCACCTG
CGCCTTCCGGAGCAGCCCGCCCGTGCTGCCGCCGAAGATGGGCGACGGCGTGTTGGGGTCCAGCTGCGGGGGCACGAAACCCTTGGGGGCCTCCTCAGTC
ACCGCCGCCGCCGCCGGTCCGTCGTCGGACGCGCGGAGCGGGGCCGGACCGCGGGACGACGGCATCGCGAGCTGCGAGCTCAGCTGCCGTGGCTTCGCCC
AGGCGGCCGCCAGCAGGTGGCGCGTGGCGGCGGAGAGCTTCTTGGAAGGAAGGAGATGAGAGAGTAGTGGACTGGATGGAGAAGG