Detailed information on CNT30361347


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678530Sorghum bicolorSetaria viridis22.6435.5590.1191forward
CNT30446634Sorghum bicolorSaccharum spontaneum10060.5497.26402forward

Expression of CNT30361347

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSFSFRCFICSVRSKLDMSEPKLSTVPFVLA

>peptide 2 (32 aa)
MLYTPPLPTPRLQSSNVQNFSCAALNGLSSQN*

>peptide 3 (42 aa)
LSTNIYCIVSRSACSYELCYTPLHCPHLDYNPLMYKISAVPR*

Sequence

>CNT30361347
GCTATCTACAAATATCTATTGTATAGTTTCAAGGTCCGCTTGCAGCTATGAGCTATGTTATACACCCCTCCATTGCCCACACCTAGATTACAATCCTCTA
ATGTACAAAATTTCAGCTGTGCCGCGCTAAACGGCTTGTCTTCACAGAATTGAGGTTCATATGATGCTCAAGATCCCTCCTGGAAGGTCAATGACCGTGA
GAGCGCAGCTGGGTTCCCCTGCAAGAATGGCAAGCCATTGATGACTGAGTCCTTCAGTGCAAGAGCCAACTGAACGTTCATCGCCGTTCTTGATCCCCGC
TATTGGGATGAGCTTCTCCTTCAGGTGCTTCATCTGCTCTGTGAGGTCTAAGCTGGACATGTCTGAGCCGAAGCTGAGCACCGTGCCATTCGTCTTGGCT
GC