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Detailed information on CNT30361317

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30677650	Sorghum bicolor	Setaria viridis	7.2	26.96	90.91	55	forward
CNT30522276	Sorghum bicolor	Setaria italica	27.88	25.88	82.63	213	forward
CNT30448338	Sorghum bicolor	Saccharum spontaneum	56.81	34.23	89.63	434	forward
CNT301541	Sorghum bicolor	Zea mays	20.29	36.73	94.19	155	forward

Expression of CNT30361317

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MEHLWTLLDAAAPSEDAAVDDVAGSRTTTSTGGGGMTVSGAGASTSTRGTAAGTAAAGGAGGVGSLTRWLVLWPPSAW*

>peptide 2 (47 aa)
MCMMTMHLSQLALSVLYKKSSNKSNNNTDTIRMNERIVCSTTELGSS*

Sequence

>CNT30361317
TGATTCCATATTAATCCCCAATCCATTTATAATAAGCTTACTGTATGTTACAAAGCACTAATTCATCAATCATCTCTTAATGAGAATGAAGTATGTGTGT
ATGAACTACAGTATACTGACAGTTAAGGATACAAGTATACGCTTCCATGAATAGGAAGATCGACCTATGTGTATGATGACTATGCATCTCTCACAACTAG
CTCTCTCTGTACTGTACAAGAAGAGCAGCAACAAATCAAACAATAATACTGACACCATACGAATGAATGAACGAATAGTGTGTTCCACCACCGAACTTGG
CAGCAGCTGATCTAGACCAAAATCTTGGACGGTTGAGGTCGAACGCGCGGGCGGCGGAGCTCCCGTTTCCGGAGCTCCCCACCTCGGACGTCTCAGCAGT
TGCCGCCGGGGCAGTGGCCGCCAGGACGTCGGTGGACGCGGCGCTGCTGCCGCCGACGCCACCGTCGTAGTGCTTCCTCTTGTGCCCGCCGAGCGCCTGG
CCGGTTGGGAACTCCTTGTGGCAGATGGAGCACCTGTGGACTCTGCTCGACGCCGCCGCACCGTCGGAGGACGCGGCGGTGGATGACGTGGCCGGCTCAC
GGACGACGACCTCGACTGGAGGCGGCGGGATGACGGTGAGCGGTGCGGGGGCCTCCACCTCCACGAGGGGCACTGCTGCCGGGACAGCAGCAGCAGGAGG
AGCAGGAGGGGTCGGCAGCTTGACACGGTGGCTGGTCTTGTGGCCCCCCAGCGCCTGGTAGGAG