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Detailed information on CNT30360466


BLAST search results

BLAST vs Swiss-Prot:
sp|P40283|H2B11_ARATH, E-value = 3e-56

BLAST vs NONCODE:
NONTPRT005013, E-value = 1e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522940Lactuca sativaSetaria italica29.6917.7685.6125forward
CNT30285319Lactuca sativaTriticum aestivum27.5516.9686.21116forward
CNT30220711Lactuca sativaHordeum vulgare27.5511.286.21116forward
CNT30443203Lactuca sativaAegilops tauschii34.6822.2683.56146forward
CNT30136307Lactuca sativaLolium perenne29.2220.7184.55123forward
CNT3015998Lactuca sativaZea mays29.6932.3885.6125forward
CNT30681751Lactuca sativaTriticum urartu27.5518.585.34116forward
CNT30363575Lactuca sativaSorghum bicolor29.9313.6784.92126forward
CNT30619778Lactuca sativaCajanus cajan34.6822.0585.62146forward
CNT30369782Lactuca sativaOryza glumipatula26.8417.7484.96113forward
CNT30429187Lactuca sativaPapaver somniferum71.528.8980.4301forward
CNT3024772Lactuca sativaPopulus trichocarpa64.3745.780.07271forward
CNT30327286Lactuca sativaAsparagus officinalis27.5512.8388.79116forward
CNT30574682Lactuca sativaOryza barthii27.5516.9683.62116forward
CNT30557628Lactuca sativaPanicum hallii29.6922.4486.4125forward
CNT30114697Lactuca sativaEutrema salsugineum66.0345.3581.65278forward

Expression of CNT30360466

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MNLFQNLEDVDLVRLHRLLVSLLLLVCSGGGCVLGELLLRCCLWCHCWWVLTVCLCVRGS*

>peptide 2 (32 aa)
MRPWGASSPLLPLVPLLVGFDCVFVCEGKLGV*

>peptide 3 (49 aa)
ELVNLVTALVPSETACLANSPGRTSLTAVWISLDDKVFFLLYLASFDAS*

>peptide 4 (35 aa)
RACKLGDSLGTFRNSMLSQLTRKNKSNSGLDFPGR*

Sequence

>CNT30360466
AGAGCTTGTAAACTTGGTGACAGCCTTGGTACCTTCAGAAACAGCATGCTTAGCCAACTCACCAGGAAGAACAAGTCTAACAGCGGTTTGGATTTCCCTG
GACGATAAAGTATTCTTCTTGTTATACCTCGCGAGTTTCGATGCTTCCTGAGCCAATTTCTCGAAAATGTCATTAATGAACGAGTTCATGATCCCCATTG
CCTTGCTTGAGATTCCGATGTCAGGATGAACCTGTTTCAGAACCTTGAAGATGTAGATCTTGTACGTCTCCACCGACTTCTTGTTTCTCTTCTTCTTCTT
GTCTGCTCCGGCGGCGGATGCGTCCTTGGGGAGCTTCTTCTCCGCTGCTGCCTTTGGTGCCATTGTTGGTGGGTTTTGACTGTGTGTTTGTGTGTGAGGG
GAAGTTAGGAGTTTGAACGAA