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Detailed information on CNT30360323


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 1e-58

BLAST vs NONCODE:
NONBNAT006984, E-value = 8e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Lactuca sativaOryza sativa20.2915.7485.9271forward
CNT30546681Lactuca sativaIpomoea triloba6447.6683.48224forward
CNT30701199Lactuca sativaQuercus lobata80.8625.6882.69283forward
CNT30375418Lactuca sativaArabidopsis thaliana35.7152.9785.6125forward
CNT30504865Lactuca sativaNicotiana attenuata45.1430.8682.28158forward
CNT30565712Lactuca sativaActinidia chinensis4046.8281.43140forward
CNT30172567Lactuca sativaTrifolium pratense69.1435.4884.3242forward
CNT30611328Lactuca sativaArabis alpina4635.3181.99161forward
CNT30211420Lactuca sativaHelianthus annuus69.1448.7980.17242forward
CNT30414711Lactuca sativaPapaver somniferum67.7124.7982.28237forward
CNT3052246Lactuca sativaAmborella trichopoda67.7119.6779.75237forward
CNT3024855Lactuca sativaPopulus trichocarpa67.4340.285.59236forward

Expression of CNT30360323

Peptides detected in this lncRNA

>peptide 1 (39 aa)
LDTIYSEYTLTHNQNPRPNHQTHIGYGPVVSKHRRHPLQ*

>peptide 2 (28 aa)
MAGLVIPWMLSRRTFLCLFAPPFPRNQLP

Sequence

>CNT30360323
ATTAGATACGATCTACAGTGAATACACACTAACACACAACCAAAACCCTAGACCTAACCACCAAACCCATATAGGGTACGGCCCTGTCGTTTCAAAGCAT
AGACGACATCCATTGCAGTAACAGTCTTGCGGCGAGCGTGTTCAGTGTAGGTTACGGCATCTCTGATGACATTCTCAAGAAAGATCTTGAGAACACCACG
AGTCTCTTCATAGATCAAGCCACTGATACGCTTGACACCTCCTCGACGAGCCAATCTTCGGATGGCGGGCTTGGTGATTCCCTGGATGTTATCACGAAGA
ACCTTCCTGTGTCTCTTTGCTCCTCCCTTTCCGAGGAACCAACTCCCAAC