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Detailed information on CNT30360275


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1S9I9|H2B1_MEDTR, E-value = 3e-45

BLAST vs NONCODE:
NONTPRT005013, E-value = 2e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675958Lactuca sativaSetaria viridis14.0927.5190.4863reverse complement
CNT30518188Lactuca sativaJuglans regia44.5222.5984.42199forward
CNT30702570Lactuca sativaQuercus lobata26.423.688.14118forward
CNT30618876Lactuca sativaSesamum indicum42.9511.8184.38192forward
CNT30381273Lactuca sativaManihot esculenta39.8249.8683.15178forward
CNT30526608Lactuca sativaPhaseolus vulgaris25.514.0987.72114forward
CNT30196132Lactuca sativaPisum sativum39.3737.1384.09176forward
CNT3094085Lactuca sativaSolanum tuberosum24.3821.5886.24109forward
CNT30179138Lactuca sativaSecale cereale41.6123.0582.26186forward
CNT30283980Lactuca sativaTriticum aestivum41.1639.1581.52184forward
CNT30565715Lactuca sativaActinidia chinensis39.1522.2985.71175forward
CNT30435406Lactuca sativaAegilops tauschii40.2725.0382.22180forward
CNT30656000Lactuca sativaTriticum dicoccoides41.1631.5181.52184forward
CNT30597299Lactuca sativaFraxinus excelsior38.4831.3387.21172forward
CNT30205622Lactuca sativaHelianthus annuus23.9439.6388.79107forward
CNT30129800Lactuca sativaCorymbia citriodora43.1823.9884.46193forward
CNT30679698Lactuca sativaTriticum urartu15.2124.0391.1868reverse complement
CNT30719869Lactuca sativaTriticum spelta41.6132.5782.26186forward
CNT30154529Lactuca sativaPrunus persica27.9652.9784125forward
CNT30570929Lactuca sativaVitis vinifera26.417.5988.14118forward
CNT3057074Lactuca sativaAmborella trichopoda29.3122.6682.44131forward
CNT3024639Lactuca sativaPopulus trichocarpa26.8529.1383.33120forward
CNT30724478Lactuca sativaLupinus angustifolius26.419.5783.9118forward

Expression of CNT30360275

Peptides detected in this lncRNA

>peptide 1 (57 aa)
NSPGSTSRTAVCISLDVMVGFLLYLASLELSCANFSKISFMKLFMIPIALLEIPMSG*

>peptide 2 (73 aa)
MNLLQHLEDIDLVRLNALLVSLLLLVSGSSTGLLGQFLSGLWLLLRGGFLSCGGFLLLRWLLLGGLFLCLWCH*

Sequence

>CNT30360275
CCAATTCACCAGGAAGTACAAGTCGCACGGCGGTTTGTATCTCCCTGGATGTGATGGTTGGCTTCTTGTTGTACCTTGCGAGCCTTGAACTCTCCTGCGC
CAATTTCTCGAAAATATCGTTTATGAAACTGTTCATGATTCCCATCGCTTTGCTGGAGATACCGATGTCGGGATGAACCTGCTTCAACACCTTGAAGATA
TAGATCTTGTACGTCTCAACGCTCTTCTTGTTTCTCTTCTTCTTCTTGTCTCCGGCAGCAGCACCGGCCTCCTTGGGCAGTTTCTTTCCGGCCTTTGGCT
TCTTCTCCGCGGGGGCTTTCTCAGCTGCGGGGGTTTTCTTCTCCTCCGCTGGCTTCTTCTCGGCGGGCTTTTTCTCTGCCTTTGGTGCCATTGAATTTGG
GAAAAATGTGAAGATCTGGATTGTAGGTTTTCAAAATTGGGGGAAAT