Detailed information on CNT30358992


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693645Lactuca sativaOryza sativa43.649.5181.09201forward
CNT30375078Lactuca sativaArabidopsis thaliana27.7726.7285.16128forward
CNT30176931Lactuca sativaSecale cereale35.5734.685.37164forward
CNT30236790Lactuca sativaBrassica oleracea32.152.383.78148forward
CNT30367636Lactuca sativaSorghum bicolor23.8637.9383.64110forward
CNT30596272Lactuca sativaOryza meridionalis35.3670.8781.6163forward
CNT3032477Lactuca sativaTheobroma cacao28.6365.6784.09132forward
CNT30116795Lactuca sativaOryza nivara32.5470.4281.33150forward
CNT30557143Lactuca sativaPanicum hallii43.626.9483.58201forward

Expression of CNT30358992

Peptides detected in this lncRNA

>peptide 1 (33 aa)
FCKRKPATDGLKNFVTPSVEAWALWAVPKASFT*

Sequence

>CNT30358992
CCTTTTGCAAAAGGAAACCAGCAACAGATGGCCTCAAGAACTTTGTGACTCCCTCAGTTGAGGCATGGGCTCTATGGGCAGTTCCAAAAGCATCATTTAC
ATAGAGATCCGCTAGTGAAGCAAGCTTTTCTGCAAATCCAGGATCATTCTTTTCTTCCTCCTTGTAAAACCTTACGTTTTCAAGAAGAAGAACACCACCA
TCAGGAAGTGAAGCCACGAAGTGGGGAACGCAGAAAGCGAGAAGGCAGGCGAACAGTGGGGCTGATACGGGAGGTAGTGGAAGACGAAGAAGTTGTGGGG
AGGAGTGAGAGAGTGGTGGGTGATGCTGCAGAAGCCATTGTTGAATAATCGAGTAAGGAATGAATCAGTGGCAGTGATAGAGAAGAAATAGATGGGGTTT
ATTATGTGGGGATTTGGGGATTGGGTGTCTGCTTTTCCTTATCGTTGAGGAGAGGCCAAAG