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Detailed information on CNT30357348


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTPRT002187, E-value = 1e-128

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677703Lactuca sativaSetaria viridis25.3958.9494.79211forward
CNT30364089Lactuca sativaSorghum bicolor24.5544.9391.18204forward
CNT30574572Lactuca sativaVitis vinifera57.47.0891.4477forward
CNT30335924Lactuca sativaCynara cardunculus23.2323.8697.41193forward
CNT30725732Lactuca sativaLupinus angustifolius29.7254.7795.55247forward

Expression of CNT30357348

Peptides detected in this lncRNA

>peptide 1 (35 aa)
RALRRKDAFRGERPWGDTVCDPWISDRETISKLHG*

Sequence

>CNT30357348
CGGGCATTGAGAAGGAAGGACGCTTTCAGAGGTGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGAGAAACCATATCCAAGCTCC
ATGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCG
AGCGAGAGCGGATTGGGGCTTTGAAGAAAAACAAAGACGAAGCTTCGTTCCTCAGCAAAGTGTTCATTTCTTTTTCGCCAGGTTTCATTCTCTTTCTTTT
TTGATTGGATGATGGAAAAACCAGCAAGCTACGGCTTGAAAGCTTACCTTCTTCTCTTCTGGAGAAAGGGCTTTCTTTATAGATGAAGACGTTGAGTAAG
GGGGGCGGAGCTTGAAGAGCGAAGCGAGCTGCGCTAGCCTATTACGTTTTTCAGCAGCAAGCTACGGTCTAACGCTTGCCTCCGGTGGCTAACCGGGCGA
AAACTCCAAAACTAGGGTTCCAAACCTTTCTCTAATAATCAGGTAAGCTTTCAAGCCCCTTGACTTTCTATTAGATTAGTTTAGTCAAGGGCGCTGTGAA
CTGTAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTC
GAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTTAATTACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAA
AGAACCCTATTTAGGGAGTGCAATAGAGAAC