Detailed information on CNT30356626


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LPW0|G3PA2_ARATH, E-value = 3e-100

BLAST vs NONCODE:
NONMTRT001777, E-value = 1e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30541340Lactuca sativaBrassica napus22.2332.6684.69209forward
CNT30244006Lactuca sativaAvena sativa13.430.8884.13126forward
CNT30231796Lactuca sativaAnanas comosus29.2672.9479.27275forward
CNT30648504Lactuca sativaRosa chinensis20.2126.179.47190forward

Expression of CNT30356626

Peptides detected in this lncRNA

>peptide 1 (42 aa)
LNERIERLTPSYLQQCQPNPPPFASNPIRYRTMQSPSPCHLP*

>peptide 2 (79 aa)
MILPSTEMALSPEGLTSAPKMPRVESYLRRWDACLTPPVSLMAMTSRGESFLPCQHLKKFLPIRPNPLIATFSFASVTPL

>peptide 3 (51 aa)
MKGSRGSLPVICNNVSQIHHPLRVTPFVIVPCNHLHHVISHNHGQRRVNSR*

>peptide 4 (59 aa)
MSSPITMVNDESTVDDTSLHLKSTDTRGSSHTARIPANSLSAASLNAALTSSAKVFLET*

Sequence

>CNT30356626
ATTGAATGAAAGGATCGAGAGGCTCACTCCCAGTTATTTGCAACAATGTCAGCCAAATCCACCACCCTTTGCGAGTAACCCCATTCGTTATCGTACCATG
CAATCACCTTCACCATGTCATCTCCCATAACCATGGTCAACGACGAGTCAACAGTCGATGACACGTCGCTGCATCTAAAGTCAACAGACACCAGAGGCTC
GTCGCACACCGCCAGAATACCAGCCAACTCATTGTCAGCAGCCTCCCTGAACGCCGCGTTGACCTCCTCAGCGAAGGTCTTCTTGGAAACCTGAACCACC
AAGTCCACGACGGAGACATTGGGTGTGGGCACACGGAGAGCAATACCGTTGAGCTTCCCTTTGAGTGACGGCAGTTGGTGGTGCAGGAGGCGTTGCTGAT
GATCGTGTCCGAATGGCTGTAAAGTTCGGCGTTGACTCCGACGACATAAGTAGGAATGTCACCTTTTCCCGGCGCAGTGATTAGAACCTTCTTGGCTCCG
GCCTGAAGGTGCTTCCCAGCTCCATCTCTGTCGACAAAAACTCCGGTTCCTTCGATCACCAAATCAATGCCCAATTCCCTGCATTCATACACTCAATTCC
TCAAATAATTACCTGCAACATTAATACGTAGTTAATTTATAGAAAAAAGAACGTACGCCCATGGGAGGTCGGAGGGGTTGCGGCTGGAAACGACTTTGAT
GATCTTGCCGTCAACGGAAATGGCGTTGTCGCCGGAAGGTTTGACTTCAGCGCCAAAGATGCCGAGAGTGGAATCGTACTTGAGAAGGTGGGATGCTTGT
TTGACACCGCCGGTGTCGTTAATGGCGATGACATCCAGAGGTGAATCCTTCCTTCCATGCCAACACCTCAAGAAATTCCTTCCGATACGCCCGAATCCGT
TGATCGCTACCTTCAGTTTTGCTTCCGTCACTCCCTTAGG