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Detailed information on CNT30355824


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 2e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639598Lactuca sativaNymphaea colorata15.7720.683.74123forward
CNT30533654Lactuca sativaEucalyptus grandis17.4427.7682.35136forward
CNT30549812Lactuca sativaIpomoea triloba18.8527.5881.63147forward
CNT30514302Lactuca sativaJuglans regia16.7922.9483.97131forward
CNT30275526Lactuca sativaChenopodium quinoa18.2125.7284.51142forward
CNT30346089Lactuca sativaEragrostis tef18.2125.2780.99142forward
CNT30597257Lactuca sativaOryza meridionalis18.3328.6681.12143forward
CNT30371492Lactuca sativaOryza glumipatula18.3326.6381.12143forward
CNT30108688Lactuca sativaOryza longistaminata18.3325.4981.12143forward
CNT30104475Lactuca sativaOryza rufipogon18.3325.4481.12143forward
CNT30578401Lactuca sativaOryza barthii18.3325.5881.12143forward
CNT30118085Lactuca sativaOryza nivara18.3326.7881.12143forward

Expression of CNT30355824

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MIYDVNSPLFRSFLSQKGGSADKRKMEERPKEQKPKANENKPVMNE*

>peptide 2 (29 aa)
MSNAVFSTKHIYMVYVISFFVFCSWSFMI*

>peptide 3 (32 aa)
MIFVRDLDFSSTQVTNFISGLTKYFKNIYLKM*

Sequence

>CNT30355824
CCCGATTTGCTCTTCCTTTACATATACATATAGAGGGTTGGGTTCTCTAGAAATTAGGGTTTAACGATAACAAGTCTGAAAAAAGTTTCATCGAAATAGC
ACCAATCTGCAGCAATGATCTACGACGTCAACTCTCCGTTGTTCCGTTCCTTCCTCAGCCAGAAGGGAGGCTCAGCTGATAAAAGGAAAATGGAGGAGAG
GCCAAAGGAGCAAAAGCCAAAGGCAAATGAAAACAAGCCTGTCATGAATGAGTAATGCTGTCTTTTCAACTAAACACATATACATGGTGTATGTCATATC
TTTCTTTGTATTTTGTTCATGGAGTTTTATGATATAGCTGGTATCATGTCTGTTATGAGGTCATTATCTTCATCACTTTTTGACTGTTTGATATTTCTTT
TGTAATGATCTTTGTTCGGGATTTAGATTTTTCTAGTACTCAAGTTACAAACTTTATCTCAGGTTTAACAAAATACTTTAAAAATATATACCTCAAGATG
TGATTATCCTGTAAAACAAACAATAACCGATATTGCGATTGGCCAATTGAAACAAGTTGCTGTATAATTTACATGTTAGATCTGAAAAATTAAAAGGATT
TATAAGGTTTCTCATGTCACCCTCAATTGTGAATATATACTTTTACAATAGTATATAATACAAAGCTTTTATTGACGACTTAACATAAAAAGTTAAAAGA
ACTTAATAACCATACAAATAATCTCACAAAACCCACACCACACTACACGACTAGATTATTACATTCTATACAAAAACCTA