Detailed information on CNT30355733


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30178569Lactuca sativaSecale cereale28.1110.829070forward
CNT30434860Lactuca sativaAegilops tauschii28.9211.6188.8972forward
CNT3013020Lactuca sativaZea mays28.9232.7390.2872forward
CNT30363895Lactuca sativaSorghum bicolor28.9218.2788.8972forward
CNT30576366Lactuca sativaOryza barthii28.9213.7488.8972forward

Expression of CNT30355733

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MSPHSSCFSSSSYRRHRRQLPWEASFRPLASSQLASSLLLAPLKGFEFRRKRD*

>peptide 2 (63 aa)
LGRDPDVRMDLLQHLKDVDLVCLHILLASLLLLIGGTGASFLGKLLSGLWLLLSWLLLCFWRH*

Sequence

>CNT30355733
CTTGGACGAGATCCCGATGTCAGGATGGACCTGCTTCAACACCTTAAAGATGTAGATCTTGTATGTCTCCACATTCTTCTTGCTTCTCTTCTTCTTCTTA
TCGGCGGCACCGGCGCCAGCTTCCTTGGGAAGCTTCTTTCCGGCCTTTGGCTTCTTCTCAGCTGGCTTCTTCTCTGCTTTTGGCGCCATTGAAAGGATTT
GAATTTAGAAGAAAGAGAGACTGAATTTCTAGAGGGAGAAAGATTGCTG