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Detailed information on CNT30355562


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30615836Lactuca sativaSesamum indicum33.2850.6581.96194forward
CNT3021362Lactuca sativaCitrullus lanatus63.4656.8481.35370forward
CNT30504810Lactuca sativaNicotiana attenuata70.8463.4484.26413forward
CNT30710642Lactuca sativaGlycine max27.4417.1181.88160forward
CNT30182233Lactuca sativaSecale cereale30.3628.4681.92177forward
CNT30143812Lactuca sativaMedicago truncatula50.623.8582.71295forward
CNT30457014Lactuca sativaSaccharum spontaneum27.6221.0781.99161forward
CNT30424172Lactuca sativaPapaver somniferum69.9858.4580.64408forward
CNT30583952Lactuca sativaEchinochloa crusgalli30.3638.8280.23177forward
CNT30174824Lactuca sativaVigna angularis47.5129.1681.95277forward
CNT30550386Lactuca sativaOryza brachyantha21.9646.5582.03128forward
CNT30336663Lactuca sativaCynara cardunculus77.0296.1593.54449forward

Expression of CNT30355562

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MTTHKTRSASHHNPPPLLPNSHRNPSYSLINRTVVVANGVLVGDPSGSGH*

>peptide 2 (42 aa)
TYWIHMPPICFLLRMLKGVSINFTGACKQKSCPNSFGKSQHV*

Sequence

>CNT30355562
CACCTATTGGATTCACATGCCCCCAATATGTTTCCTTTTGAGGATGCTCAAGGGGGTCTCCATAAACTTCACTGGTGCTTGTAAGCAAAAATCTTGCCCC
AATTCTTTTGGCAAGTCCCAGCATGTTTAGAGTGCCCATCACATTGGATATGATGGTCTTGACAGGATTGTACTTGTAATGGACTGGGGAAGCAGGACAA
GCTAAATGATAGATTTGATCCACCTCCAGTAAGATAGGTTCAACCACATCATGCCTAATTAACTCAAATCTAGGGTTCCCAAAATGATGCGCAACATTCT
CTTTTCTACCAGTAAAGAAATTATCAATGACAATCACATCATCTCCTCTTGCAATCAACTTATCAACTAAATGACTACCCACAAAACCAGATCCGCCAGT
CACCACAACCCGCCTCCTCTTCTGCCCAATAGCCACCGGAACCCGTCCTACTCCCTTATTAACAGGACGGTAGTAGTGGCTAACGGTGTCTTGGTTGGAG
ATCCCAGTGGATCTGGGCATTGACGGGATTTGATATCCTCTGCCAGTATCGGCTATGCTGATGGTGGTAAACGATGGTTTGAG