Detailed information on CNT30352118


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30219730Eragrostis tefHordeum vulgare23.311.582.78151forward
CNT30382729Eragrostis tefTriticum turgidum22.692386.39147forward
CNT30435125Eragrostis tefAegilops tauschii22.6918.0485.03147forward
CNT30240279Eragrostis tefAvena sativa23.312.4484.77151forward
CNT30474047Eragrostis tefSaccharum spontaneum24.0728.6885.26156reverse complement
CNT30367860Eragrostis tefSorghum bicolor23.312.4488.08151reverse complement

Expression of CNT30352118

Peptides detected in this lncRNA

>peptide 1 (54 aa)
GYAWLAELYPSISRENGGRPRGVTDDSMATPQPLGVRAPSRAVKATDHHTSEFS*

>peptide 2 (83 aa)
GMHGWLSCIPPSLGRTGEDLVASPMTRWRRLNHLVCAHRAEPSKPRIITPQSFREKRERCTSKKQTFSNHRPSTHPSISCTAQ*

>peptide 3 (33 aa)
MNHRGGNGELTFYRSDHSAFSVPEPCPRARKEK*

>peptide 4 (49 aa)
MGKLCCSSEEEEEAGFNLLGLLVALVIALVFMLICSPPRRRCVAIYPCC*

Sequence

>CNT30352118
TGGGTATGCATGGTTGGCTGAGCTGTATCCCTCCATCTCTCGGGAGAACGGGGGAAGACCTCGTGGCGTCACCGATGACTCGATGGCGACGCCTCAACCA
CTTGGTGTGCGCGCACCGAGCAGAGCCGTCAAAGCCACGGATCATCACACCTCAGAGTTTTCGTGAGAAAAGGGAACGTTGCACTTCCAAGAAGCAAACT
TTCTCCAACCACCGTCCTTCCACACATCCATCCATCTCCTGCACTGCGCAGTGACCGGAGAGAAAAGAGAGCTCGTCGTCTTCGTGTTCGTCGTCCACTG
CGCCGGCGGCCGATCGCCATGGGGAAGCTCTGCTGCAGCAGCGAGGAGGAGGAGGAGGCTGGGTTCAACCTCCTGGGGCTGCTCGTCGCGCTCGTCATCG
CCCTCGTGTTCATGCTCATCTGCTCGCCGCCCAGGCGCCGCTGCGTCGCCATCTACCCTTGCTGCTGATCGTGGGGAGTGAAGGTCGTGATGGGATAGCA
CTGTATGAATCATAGGGGTGGCAATGGAGAGTTGACATTCTATCGGTCAGATCACTCAGCTTTCTCAGTGCCAGAACCTTGCCCACGGGCACGCAAAGAG
AAATAATTGACTGGCACAAAATTGTTTTTCTTGAACACGCAGGAGAGC