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Detailed information on CNT30350734


BLAST search results

BLAST vs Swiss-Prot:
sp|P37834|PER1_ORYSJ, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673552Eragrostis tefSetaria viridis11.4441.986.3688forward
CNT3013502Eragrostis tefZea mays16.5156.1992.91127forward
CNT30149367Eragrostis tefBrachypodium distachyon11.3122.0883.9187forward

Expression of CNT30350734

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MAAILAMDFAKSSKKWPSYLPVAACRTYALVKRWLSRDASDRSRPRRRATWR*

Sequence

>CNT30350734
GCTTGGTAGGGAATTATTGTAGCCAATAACAGATCAAATTCATAGCAATATGCAAACGTATACCCCCATAAGATTAGCTAGAGAAGAGAACAAAAACAAA
CTAACGTATCATATTTGCTACTACCTAGCTAGCTAGTTCAGTACTCCGTCCGTTTTGTTATTGTTGATGTTGGTTAATTAGTTCAAAACAGAACTAATAA
CCAGCTTCAACAAAAGAAAAACAGAGGAGTATTTGGTACAACAAATTAAATCATTATTACAGGATGGGGAATATGAATCGAAATGGTAAGCTACCACAGA
TACATGAGACAGAGGCAGAGGAGTACATTAATTAGTTGACACGGTTGCACTGCTTCCTGATCTCGCCCTGGTTGCCGGTGAGCACGCCGATGGCGGCCAT
CTTGGCCATGGACTTTGCGAAGTCGTCGAAGAAGTGGCCGTCGTACCTTCCGGTGGCGGCCTGCAGGACGTATGCCCTGGTGAAGCGGTGGTTGAGCAGG
GACGCGTCCGACCGGAGCAGGCCGCGCCGCCGCGCCACGTGGCGGTAGTAGCTGGCGTCGAAGCTGAGGAAGCTGCCGGGGTCCATCTCGTTGAGCGTGG
TGTTGTCGGCGAGGCTCCGGCACCTCGACCTGAGCTTGGCCAGGTACGCGTCGTCCAGCGCCGGGTCGACGCCGGTCGCTGAAGAGGTTGCAGTGGGCCG
TGCCGAGCGTGTGTCCGCCGGAGAGCACGACGAGGTCCTTCACGCCGAGTCCCTTGGCGGCGAACATGG