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Detailed information on CNT30350542


BLAST search results

BLAST vs Swiss-Prot:
sp|P04711|CAPP1_MAIZE, E-value = 1e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30497176Eragrostis tefDigitaria exilis25.9914.4384.14145forward

Expression of CNT30350542

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MPGSPLAKTISSRSRVTLKKGHSLYISLSSWKFLMSLSMADLKAVPTPSHTGRWNLVWVQEKIQGMARSVVMPPPGLLFAGRLPMFMRPYSVSGVAYM*

>peptide 2 (63 aa)
MASARRRRAACHRERRCRGLPWRKPSQAGSHQMASARRRRAACHRERRCRGLPWRKPSQAGPG*

>peptide 3 (49 aa)
SFPKFIMSSYISNNIERESTWRRSSCVSKYLLLRFSPNGFSSSATSSLS*

Sequence

>CNT30350542
TTTCCTTTCCAAAATTCATAATGAGCAGTTACATAAGCAATAACATTGAACGGGAGAGTACCTGGAGGAGAAGCTCCTGCGTCTCCAAATACTTGCTCCT
CAGGTTCTCACCAAATGGCTTCAGCTCGTCGGCGACGAGCAGCTTGTCATAGAGAGCGGCGATGCCGGGGTCTCCCTTGGCGAAAACCATCTCAAGCAGG
TTCTCACCAAATGGCTTCAGCTCGTCGGCGACGAGCAGCTTGTCATAGAGAGCGGCGATGCCGGGGTCTCCCTTGGCGAAAACCATCTCAAGCAGGTCCA
GGGTGACCCTGAAGAAGGGCCACTCATTGTACATCTCCTTGAGCAGCTGGAAGTTCTTGATGTCCTTGTCGATGGCAGACTTGAAAGCGGTGCCAACTCC
GAGCCACACGGGGAGGTGGAACCTGGTCTGGGTCCAGGAGAAGATCCAGGGGATGGCACGCAGCGTTGTGATGCCACCACCGGGCCTCCTCTTTGCCGGG
CGACTACCGATGTTCATGCGGCCGTACTCAGTCTCAGGTGTAGCCTACATGTAGCATG