Detailed information on CNT30350530


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673569Eragrostis tefSetaria viridis19.3564.1387.62202forward
CNT30521774Eragrostis tefSetaria italica23.479.3287.35245forward
CNT30368424Eragrostis tefSorghum bicolor20.2111.5892.42211forward
CNT30148536Eragrostis tefBrachypodium distachyon7.4736.4592.3178forward
CNT30583395Eragrostis tefEchinochloa crusgalli24.8124.384.56259forward
CNT30557319Eragrostis tefPanicum hallii23.3721.6185.25244forward

Expression of CNT30350530

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MASARRRRAACHRERRCRGLPWRKPSQAGPG*

>peptide 2 (53 aa)
MPAAIPFMVMMSVSSSPGAYSLVELSWTTLAGSLFSGGCLATLKLGSLICFRV*

>peptide 3 (98 aa)
MPGSPLAKTISSRSRVTLKKGHSLYISLSSWKFLMSLSMADLKAVPTPSHTGRWNLVWVQEKIQGMARSVVMPPPGLLFAGRLPMFMRPYSVSGVAYM*

>peptide 4 (52 aa)
CKFGMPTNIKDTKGQCNKTYDIYIYWVIPCMPPKNLLYIICHRCVYPLTVAH*

Sequence

>CNT30350530
TGTGCAAATTTGGAATGCCAACAAATATTAAGGACACAAAGGGGCAGTGTAATAAAACATATGATATTTATATTTATTGGGTAATTCCTTGTATGCCACC
AAAAAACTTGTTATACATCATATGTCATCGGTGTGTATATCCACTAACAGTGGCACATTAGGGGTCTGGGTTTTAACCAGTGGCATAAAAGGAATTGCTC
CTTATTAATTACATCCATAGAGTTGTATTTTTTTAATGAGGAAACATACATATGAAGGGTATGTCTTCCCTTCAAGCACGTGATTGTAGGAAAATTAGGG
AATAGTTTAAGTCGTAAATTGCAGGCTTATAAAAACCGCATCCATCGGTTCACAGGCCTTGAGCACTCAGCTGGGAGAGAAGCAGTGTAGAAACCTAGCC
GGTGTTCTGCATGCCGGCGGCGATACCCTTCATGGTAATGATGAGTGTGTCCTCCAGTCCCGGTGCGTACTCACTTGTTGAGTTGAGCTGGACCACGTTG
GCAGGCTCCTTGTTCAGCGGCGGCTGCTTGGCCACCTTGAAGTTGGGGTCCCTTATCTGCTTCAGGGTGTAGGCCTGGAACACATTCAGGGTGGTGATGT
AAGGGTCGCTCTCAAGAATTTCCTTGAGAAGCTCCTGCTAAGGAGAAGATCCTGTGTCTCCAAATACTTGCTCCTCAGGTTCTCACCAAATGGCTTCAGC
TCGTCGGCGACGAGCAGCTTGTCATAGAGAGCGGCGATGCCGGGGTCTCCCTTGGCGAAAACCATCTCAAGCAGGTCCAGGGTGACCCTGAAGAAGGGCC
ACTCATTGTACATCTCCTTGAGCAGCTGGAAGTTCTTGATGTCCTTGTCGATGGCAGACTTGAAAGCGGTGCCAACTCCGAGCCACACGGGGAGGTGGAA
CCTGGTCTGGGTCCAGGAGAAGATCCAGGGGATGGCACGCAGCGTTGTGATGCCACCACCGGGCCTCCTCTTTGCCGGGCGACTACCGATGTTCATGCGG
CCGTACTCAGTCTCAGGTGTAGCCTACATGTAGCATGGGATGGA