CANTATAdb - search

Detailed information on CNT30350528

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30596912	Eragrostis tef	Oryza meridionalis	12.26	21.72	85.71	91	forward

Expression of CNT30350528

Peptides detected in this lncRNA

>peptide 1 (52 aa)
CKFGMPTNIKDTKGQCNKTYDIYIYWVIPCMPPKNLLYIICHRCVYPLTVAH*

>peptide 2 (53 aa)
MPAAIPFMVMMSVSSSPGAYSLVELSWTTLAGSLFSGGCLATLKLGSLICFRV*

Sequence

>CNT30350528
TGTGCAAATTTGGAATGCCAACAAATATTAAGGACACAAAGGGGCAGTGTAATAAAACATATGATATTTATATTTATTGGGTAATTCCTTGTATGCCACC
AAAAAACTTGTTATACATCATATGTCATCGGTGTGTATATCCACTAACAGTGGCACATTAGGGGTCTGGGTTTTAACCAGTGGCATAAAAGGAATTGCTC
CTTATTAATTACATCCATAGAGTTGTATTTTTTTAATGAGGAAACATACATATGAAGGGTATGTCTTCCCTTCAAGCACGTGATTGTAGGAAAATTAGGG
AATAGTTTAAGTCGTAAATTGCAGGCTTATAAAAACCGCATCCATCGGTTCACAGGCCTTGAGCACTCAGCTGGGAGAGAAGCAGTGTAGAAACCTAGCC
GGTGTTCTGCATGCCGGCGGCGATACCCTTCATGGTAATGATGAGTGTGTCCTCCAGTCCCGGTGCGTACTCACTTGTTGAGTTGAGCTGGACCACGTTG
GCAGGCTCCTTGTTCAGCGGCGGCTGCTTGGCCACCTTGAAGTTGGGGTCCCTTATCTGCTTCAGGGTGTAGGCCTGGAACACATTCAGGGTGGTGATGT
AGGGGTCACGCAGCCTCAGGCCCTGCTTCAGGGTGTAGGCCTGGAAGACGTTCAGGGTGGTGATGTAGGGGTCACGCAGGCGCAGGCGCTGCTTCAGGTA
AGGATCACCTTCAAGAATTTCCTTGTGCCCTGCAATCTGTAG