Detailed information on CNT3035046


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501325Cucumis meloCoffea canephora35.339.590.81914reverse complement
CNT30618776Cucumis meloSesamum indicum34.843.6389.23901reverse complement
CNT3021612Cucumis meloCitrullus lanatus3.5545.3292.3992forward
CNT30401845Cucumis meloBeta vulgaris7.2627.3780.85188reverse complement
CNT30255597Cucumis meloAvena sativa8.3424.7487.04216forward
CNT30231730Cucumis meloAnanas comosus2.7825.997.2272reverse complement
CNT30655384Cucumis meloRosa chinensis19.1260.1593.33495forward
CNT30627396Cucumis meloDaucus carota8.552.3890.91220reverse complement
CNT30679583Cucumis meloTriticum urartu36.2320.1285.5938reverse complement
CNT30104494Cucumis meloOryza rufipogon6.9578.2685180forward

Expression of CNT3035046

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRTYYPYSGTRGGTTSRSTYSCPGRIRLGLPSCSDLPVA*

>peptide 2 (61 aa)
MPPSRGADRIGVSLGSHRPTVILKLPCLVEKKRTKVGSLPVLFSAANWDRSPARSDWSNLL*

>peptide 3 (32 aa)
MRLSKTSRPRSGLPAYWDLQEAEFLCFLSSSQ*

>peptide 4 (34 aa)
MPQQKDGPLCISFFPEGKKKYPHHGEPLLVIGMR*

>peptide 5 (74 aa)
MRLIKLLQMSHEMEYEPIQSLRSFFSNSLILQTSLILTEGSKNVKRTEGSTERSPRFKEEAQRMIEVLRTCSFH*

Sequence

>CNT3035046
GCCATTAAAAAACTAAAAGGAGGAGGAGTATAGTCTTCTTCCATATATATTAGTCCTCTGGAACCTCTTTGATCCACAGATGAATATGGATATAAACAAG
TCCTTCGGCTCAAAAACAAGGGTTAGGACCAAAGAATTTGCGAGTGGAATTCACGAACGAATATGAGACTAATTAAGCTACTCCAGATGAGTCATGAAAT
GGAATATGAACCTATTCAGTCGCTTCGATCATTCTTCTCAAATTCTTTGATCCTCCAGACCTCTTTGATCCTAACGGAGGGCTCAAAGAATGTGAAAAGG
ACTGAGGGCTCGACTGAAAGGAGTCCAAGATTCAAGGAGGAGGCTCAAAGAATGATCGAGGTCCTCCGGACTTGTTCATTCCACTAATATTGTCTCATTG
ATAAGGGCTAAGTCAAAGATGGAACTAGACTAAGATTAAGCTACTCCAGATGAGTTTCAGAGGAATTTGATTTGAGAAGTGGAAGTCATAAAAAAGAGAT
CTTTCGATTCGTACCGCTACGTGGGATCGCTTGCTGGCCTATATATATTTCTATTGCTAGATCGCTGTCTTTTAACCCTCTCTTCTTCTTTGTCAACGCT
ACCTTGGACCTAAAGGAAAAGGCGCTACTTAGCCCTAGATTTTGAGAAGTCAGCGGCTGAGTTAGCCTAGCCTACCCTCTCAATGTATTGTATAGTAGGG
TATAGTAGGCGAGCGAGTTAGCGAAGACGCTTAGGCTAATAGATAAGAGAGCGTCGGTGCTACGCCTTCATTCTACTACGCGTAGCAAAGGTTACGAATT
AGCTCGAGGTTAGGAGAGTCAAGTCAAGGGGGAAGGCCATACCTACATAGAAGAACCGCTGTTCGTTGACTTTCTAAGGTCTAACCTTTCGCTCCCCTAC
TGAAAAGGAGGAAAGCAGCTTGACTCTCTTGACTTGAAAGAGGCAGCCCACTACGCTAGAGATCAGAAGAAAGAGATCTGAATTCGATCTTTGTCTTCTT
TCTTGAGAGGAGCAAAGCAGCTTCGCACTACTTAAGATTCAATTCAAAAGGTCCTACTTAGTTTCGTAAGCCTTTGTCATTGTCAGTCAACTAAGTAGGG
CCTGAGGCCCCCTGCGAATCCGTAAATCTCAGGAGCATGCCGCAACAAAAGGATGGTCCCCTATGCATTTCATTCTTTCCGGAAGGGAAAAAGAAGTACC
CCCATCATGGTGAACCTCTCCTTGTGATCGGGATGAGGTAGATGCCTCCCAGCCGGGGGGCGGATCGAATCGGAGTTTCCTTAGGTAGCCACCGACCTAC
AGTTATCCTGAAACTTCCGTGCTTGGTGGAGAAGAAGCGAACAAAGGTAGGCTCGCTTCCTGTCTTGTTCTCTGCTGCGAACTGGGATCGCTCGCCAGCT
AGGTCAGATTGGAGCAACCTTTTATGAGAACATATTACCCTTATTCGGGGACAAGGGGCGGAACGACCTCTCGATCTACTTACAGCTGCCCAGGAAGAAT
TCGTCTAGGCCTTCCCTCTTGCTCCGATCTCCCCGTAGCCTAGGGCCTTGTCTGGGCCAAGAGCCATAGTTAGTTGCTGTTTCCATTTGCTTCTTTTTTT
TTCTTGTTGTTGATACCGGCAAGACCCAGCCAGATGATGTCTTCTGGTTGGTAGTGAGAGGACTTTGAGTACCTGCATACCCAAAAGAAAGGGGGCGTCA
AAAACAAGAATTTGCTTTTTTTTCTTGCTCTCCCTTAGCAGCGGGGAAGGAGTCTATCTATCTGCCTAGCTTTGGTAGATTTCCTCCAACGCAATCCACA
GAAATGAAAGGAATCCCTTCCCTTGGTGGATAAGTCCGACGACGGAGCAGCAGTGCGGAATTGACTTTCTCGTCTGGTGGATCTGATCTATAGTTAGGGG
GCAATACATACCAAAAGGTTCGAAGAAGGAAGGCGCATAAGAGGGAATTTTCTGAACTCATTCTCAGTCTAGACTGACGACATATCCCGCCTCTTCCTTC
CTTGCCCGCCTCAGAATATTCCTTCCTGGTGGGACTCGCATTGATTGAAATTGATTGAATCTTTCTTGAACTGATGAGGCTTTCCAAGACGAGTAGACCG
CGGAGTGGGTTACCTGCTTATTGGGACCTGCAAGAAGCTGAGTTTCTTTGCTTTCTTTCGTCGTCACAGTAGTTGGAAAAAGAAAAAGTCAAAGCAGCGG
ACCGCTTTTCATCTGAATAGAAGTCTATGAAAGTGGTTCATCAGCTTGAAACTGCGAAAGTGCTCAAGTAAGGAAAGATATGAATCGTCGTCGTTTATAA
AGCTCTGATGATCTTCTCTTTCCTCTAAGGCTTCGCACCTTTCGTCGATTTCAGCTTCAAGACAGCGGATCCCCATAGAACCTAGTTTGGCCTGGCCCCC
TGAGGCCTGAGTTTCCCCTTCGTCATCAGATGCTATTGGGAGCTGTGACCGCGGAGTGGGAGTACTGATTTGACTTCTTCCCCACGGATCATCCTGGTGG
AGATACCGCTACGTGGGCCCGATCCTTCCTAACTAATCAGTTTCTTTTTTTTCAACGAAAGAACAAGTAAAGAAGAGAAGACCTCTCAA