Detailed information on CNT3035037


BLAST search results

BLAST vs Swiss-Prot:
sp|P84563|PSAD_POPEU, E-value = 4e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695265Cucumis meloOryza sativa31.6713.7186.3295forward
CNT30677834Cucumis meloSetaria viridis27.3317.385.3782forward
CNT30522550Cucumis meloSetaria italica27.3317.2385.3782forward
CNT30710271Cucumis meloGlycine max3521.0882.86105forward
CNT30554655Cucumis meloOryza glaberrima31.6710.8686.3295forward
CNT302080Cucumis meloZea mays29.3320.5684.0988forward
CNT30619829Cucumis meloCajanus cajan32.679.9482.6598forward
CNT30596768Cucumis meloOryza meridionalis31.6712.1385.2695forward
CNT30356415Cucumis meloLactuca sativa3731.9984.68111forward
CNT30370811Cucumis meloOryza glumipatula31.6712.0186.3295forward
CNT30577354Cucumis meloOryza barthii31.6711.5686.3295forward
CNT30579578Cucumis meloEchinochloa crusgalli27.339.9685.3782forward
CNT30117448Cucumis meloOryza nivara31.6714.0786.3295forward
CNT30113105Cucumis meloFicus carica32.6712.2582.6598forward
CNT3049718Cucumis meloCucumis sativus3721.2698.2111forward

Expression of CNT3035037

Peptides detected in this lncRNA

>peptide 1 (79 aa)
GFPCYDIEFLHLSLPEESPGAAREDWGRGAGVELGWEREEEAVLRWGLEVRKERVGDCFHGMEMAEDLGVERDGVKRVA*

Sequence

>CNT3035037
GGGGATTCCCATGTTATGACATAGAATTCCTCCACTTGAGCCTTCCGGAGGAGTCCCCCGGTGCTGCCCGCGAAGATTGGGGACGGGGTGCTGGGGTCGA
GCTCGGGTGGGAGCGGGAAGAGGAGGCGGTCTTGAGGTGGGGCTTGGAGGTGAGGAAGGAGAGAGTTGGGGATTGCTTCCATGGAATGGAAATGGCGGAG
GATTTGGGAGTGGAGAGAGATGGGGTGAAGAGGGTGGCTTGAGTGGCCATGGCCATGGGATTTGGAGCAGAGGAAGAGGATTGGAAATGGTGGATTGGGA