CANTATAdb - search

Detailed information on CNT30350258

BLAST search results

BLAST vs Swiss-Prot:
sp|Q69UI2|RS131_ORYSJ, E-value = 6e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694623	Eragrostis tef	Oryza sativa	31.06	30.75	87.09	333	forward
CNT30675786	Eragrostis tef	Setaria viridis	11.38	36.42	81.97	122	forward
CNT30307182	Eragrostis tef	Triticum aestivum	11.01	31.22	85.59	118	forward
CNT30436841	Eragrostis tef	Aegilops tauschii	36.94	59.55	87.88	396	forward
CNT30131980	Eragrostis tef	Lolium perenne	18.28	31.92	90.82	196	forward
CNT30688700	Eragrostis tef	Triticum urartu	11.01	28.5	85.59	118	forward
CNT30581348	Eragrostis tef	Echinochloa crusgalli	46.64	48.36	89.8	500	forward
CNT30117171	Eragrostis tef	Oryza nivara	25.93	37.98	84.17	278	forward
CNT3064134	Eragrostis tef	Selaginella moellendorffii	4.1	20.85	93.18	44	forward

Expression of CNT30350258

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPFPGPYMRPMATDGAGCGERGRREGRATERAAAAAAVAKGN

Sequence

>CNT30350258
CACTCTTATACCTAATAGTTTGTAGAACTCTGAAACCTTACATTTCCAAGTTGACTGGCTAAAACTAAACATCTAGAAACCTAATTGCACAGCTTATTCA
ATGTCTGGAACAAGGCAACCAACGTCCTAAGCCAGGACATCTTTTGGAGGCTACTCAATTAGCACCACTCGTCAGCCTCTTTCCAAACAACACGAATCAG
ACAACTAACTAATCGATCAAACCCATCCAACAATAGTGAATCACAAGATAGAAAGGAACAAACGAGAACAAATTATCACCAAGCCTCTTGCTTCATTCTG
AACTTTCAACGAGCATACATCCATACAGAGTAACCAACCTACTCAAGGTTAAAGCAAACTCCAAACCATTTCGAATAAGGTAGCTCCCAAGGCTTAAACA
TGATCCAGTCTAGGTTCATTAGGTCGATCTAACACCTTACATATCAAAAAAAGTACGAATTAACTAAACTCCGAAGCTGTAGAGAATTCACAGGAACCGA
GAGACTCGAACGAACCCATCGCTTACGCCACCAGGGTGCTCGCGGTGGTGGACTCGAACTTCCAGGAGGCGGGGATCTTCTTGGCGCGGCGGTAGTAGCG
GGCGAGGCGGTGGACCCTGCTCTCGACGAGGATGAGCCGGAACTTTGCGTCCACGTCGGACCTGTTCCTGTCCAGGTGCTTCCTGATCGCGACGGCCTTC
TTGATGAGGAAGTAGAGGTCCTCGGGCACCTCCGGCGCGAGCCCGCGGGCCCTGAGCAGGCGCAGGATCTTGCCGCCGGTGACGCCGCGGACGAGCGGCA
CGCCTTGCGTGTCGCGGAGCAGTGTGCCAATCTGCGACGGCAGCATGCCCTTCTTGGCGGAGCGCACGATCGCCTCCTCCACCTCCGGCGCGGTCGTCTT
GACCCAGCTCGGGGCCGCCCGGCTGTAGGGCACCACCGAGGAGGACATGCCCTTCCCTGGTCCGTACATGCGGCCCATGGCGACGGACGGCGCGGGTTGC
GGCGAGCGGGGACGGCGAGAAGGGAGAGCGACTGAGCGAGCGGCGGCTGCGGCGGCGGTTGCGAAGGGAAAC