Detailed information on CNT30349983


BLAST search results

BLAST vs Swiss-Prot:
sp|P42048|PSAF_CUCSA, E-value = 9e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678624Eragrostis tefSetaria viridis38.3726.497.8794forward
CNT30629005Eragrostis tefVigna unguiculata33.0613.8986.4281forward
CNT30300474Eragrostis tefTriticum aestivum53.8812.0193.18132forward
CNT3086500Eragrostis tefVigna radiata29.3912.3788.8972forward
CNT30664555Eragrostis tefTriticum dicoccoides53.8824.9190.15132forward
CNT30684979Eragrostis tefTriticum urartu55.155.5690.37135forward

Expression of CNT30349983

Peptides detected in this lncRNA

>peptide 1 (80 aa)
FLIEFFSRLANALDSLHGVRPAMSAAAGGGEVAAEERSTDESASAAEKVAAVEAARDAMVAAAAAAGESEWNEEELVMEAA

>peptide 2 (40 aa)
LLDRVLLALGERLGLLARGQAGDVGGGRGRGGGRGGEEHR*

>peptide 3 (37 aa)
MRVPARRRRWPRSRRRGMPWLLLLLRPARVSGTRRSL*

Sequence

>CNT30349983
CTTCTTGATCGAGTTCTTCTCGCGCTTGGCGAACGCCTTGGACTCCTTGCACGGGGTCAGGCCGGCGATGTCGGCGGCGGCCGGGGGAGGGGAGGTGGCC
GCGGAGGAGAGGAGCACCGATGAGAGTGCCAGCGCGGCGGAGAAGGTGGCCGCGGTCGAGGCGGCGAGGGATGCCATGGTTGCTGCTGCTGCTGCGGCCG
GCGAGAGTGAGTGGAACGAGGAGGAGCTTGTGATGGAGGCGGCGC