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Detailed information on CNT30349338


BLAST search results

BLAST vs Swiss-Prot:
sp|P04711|CAPP1_MAIZE, E-value = 7e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193220Eragrostis tefSecale cereale28.5926.9879.5239forward

Expression of CNT30349338

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPAAIPFMVMMSVSSSPGAYSLVELSWTTLAGSLFSGGCLATLKLGSLICFRV*

>peptide 2 (31 aa)
MASARRRRAACHRERRCRGLPWRKPSQAGPG*

>peptide 3 (53 aa)
MPGSPLAKTISSRSRVTLKKGHSLYISLSSWKFLMSLSMADLKAVPTRSHTGRW

Sequence

>CNT30349338
AAAAATTTAGAATGCCAACAAACAGTACGGACACAAAGGGGTAGTGTAATAAAACATATGATATTTATATTTATTGGGTAATTCCTTGTATGCCACCGAA
AAAACTTCTAATACATCATATGTCATCGGTGTGTATATCCACTGACAGTGGCACATTAGGGGTTTAGGTTTTAACCAGTGGCATACAAGGAATTCTCCTT
ATTAATTACATCCATAGTGTTGTATTTTTAAATGAGGAAACATACATATGAAGGGTATGTCTGCCCTTCAAGCACGTGATAGTAGGAAAATTAGGGAATA
GTTTAAGTCGTAAATTGCAGGCTGATAAAAACTGCATCCATCGGTTCACAGGCCTTGAGCACTCAGCTGGGAGAGAAGCAGTGTAGAAACCTAGCCGGTG
TTCTGCATGCCGGCGGCGATACCCTTCATGGTAATGATGAGTGTGTCCTCCAGTCCCGGTGCGTACTCACTTGTTGAGTTGAGCTGGACCACGTTGGCGG
GCTCCTTGTTCAGCGGCGGCTGCTTGGCCACCTTGAAGTTGGGGTCCCTTATCTGCTTCAGGGTGTAGGCCTGGAACACATTCAGGGTGGTGATGTAGGG
GTCACGCAGCCTCAGGTTCTCACCAAATGGCTTCAGCTCGTCGGCGACGAGCAGCTTGTCATAGAGAGCGGCGATGCCGGGGTCTCCCTTGGCGAAAACC
ATCTCAAGCAGGTCCAGGGTGACCCTGAAGAAGGGCCACTCATTGTACATTTCCTTGAGCAGCTGGAAGTTCTTGATGTCCTTGTCGATGGCAGACTTGA
AAGCGGTGCCAACTCGGAGCCACACGGGGAGGTGGA