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Detailed information on CNT30349302


BLAST search results

BLAST vs Swiss-Prot:
sp|P13192|PSAF_HORVU, E-value = 1e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678495Eragrostis tefSetaria viridis32.0744.8492.7178forward
CNT30522442Eragrostis tefSetaria italica28.1119.1494.87156forward
CNT30525128Eragrostis tefPhaseolus vulgaris18.7424.1382.69104forward
CNT30188078Eragrostis tefSecale cereale21.812.4992.56121forward
CNT30298665Eragrostis tefTriticum aestivum39.4633.8590.87219forward
CNT30394054Eragrostis tefTriticum turgidum20.911.7394.83116forward
CNT30664845Eragrostis tefTriticum dicoccoides35.1432.5592.31195forward
CNT30137478Eragrostis tefLolium perenne20.3644.4986.73113reverse complement
CNT309319Eragrostis tefZea mays35.3235.994.9196forward
CNT30684883Eragrostis tefTriticum urartu39.4636.3890.87219forward
CNT30148341Eragrostis tefBrachypodium distachyon36.468.9492.08202forward
CNT30579037Eragrostis tefEchinochloa crusgalli35.1420.6393.85195forward
CNT3040196Eragrostis tefMarchantia polymorpha14.9529.1284.3483forward

Expression of CNT30349302

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRASVSGTIRTESSIPFFLHNPIRAPTTNDKSRHTRKQI*

>peptide 2 (52 aa)
MSASLTTSSPLMSSRYAATGQMNPRGRSLVASSTSMMISLMAGFFSPRMAMR*

>peptide 3 (32 aa)
MMAQYQDTVTDDGSVSRIKLDATKASLSCFEF*

Sequence

>CNT30349302
CCCCTCCTACCTAAATTCATGCGTCCCCTTGGATACAGTTACAGATGATGGCTCAGTATCAAGATACAGTTACAGATGATGGCTCAGTATCAAGAATAAA
ATTAGATGCGACAAAGGCTTCCCTCAGTTGCTTCGAATTTTGAAATCGTTACCATGAATTGAATTTTCAATATGGTGAATGCACACAAGGGATAGGTACA
GCACAGTTATACAACAATGAGGGCTTCAGTTTCAGGTACTATCAGAACAGAGAGTTCCATTCCATTTTTCCTCCACAATCCTATACGAGCTCCTACAACA
AATGACAAATCACGGCACACACGCAAACAAATTTAGTAGTATCCTATGTCGGCATCCTTGACGACGAGTTCTCCGTTGATGAGCTCACGGTACGCGGCGA
CGGGCCAGATGAACCCCCGGGGGAGGAGCCTGGTGGCGAGCTCGACGTCGATGATGATCTCCCTCATGGCGGGCTTCTTCTCGCCGCGGATGGCGATGAG
GTAGCTCCTGCCGACCCATCCGATCCAGCCGGCGATGTAGAGGAAGAGCAGGCCG