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Detailed information on CNT30348947


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0D3N0|PER2_ORYSJ, E-value = 2e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671850Eragrostis tefSetaria viridis31.4931.3588.03142forward
CNT30180112Eragrostis tefSecale cereale34.5915.7183.33156forward
CNT30220972Eragrostis tefHordeum vulgare29.0545.0283.21131forward
CNT30596630Eragrostis tefOryza meridionalis32.5919.1487.07147forward
CNT30370682Eragrostis tefOryza glumipatula32.5918.1987.76147forward
CNT30102748Eragrostis tefOryza rufipogon31.9318.8286.11144forward
CNT30577207Eragrostis tefOryza barthii32.5916.8288.44147forward
CNT30117210Eragrostis tefOryza nivara31.4920.5289.44142forward
CNT30604331Eragrostis tefOryza punctata31.9320.986.11144forward

Expression of CNT30348947

Peptides detected in this lncRNA

>peptide 1 (36 aa)
CTLYVLVMYRLFDLILVLSMLPCLPVFVLLVHLGAA*

Sequence

>CNT30348947
TCTGTACGTTGTACGTGTTGGTGATGTATAGGCTCTTCGACCTTATTCTGGTCTTATCTATGCTGCCTTGCCTGCCAGTGTTCGTTTTATTAGTTCACCT
TGGAGCAGCTTAGCCTGATCTCCCCTTGGGACCCCGTGAGAGGGCTGATGTTGCCCATGGTGACCATCGCCGACGCGAAGTTCCTGACCGTGTTGTCGGT
GCTGCCGCCGTTGAAGAGCTCCTGATCCGAGTGCAGGAGGCCCTTTTGGGAGAGAAGGTTGTTGTAGTACGCGTTGTCGAATGTGTTGGGCGTCGTGGTG
TCTAGCGGCGCCAGGTTGGTGTTTCCGTTGGGGGATGCCGCGGGGCAGTTTGCCTTGAGCGACGTCGCGAACGTCGAGTTGATGTTCGTGTCGTTGTAGA
TGTGGGGTCTGAAGTTCTGGCACTGCGCTTGACCAATTGTGTGAGCACCTG