CANTATAdb - search

Detailed information on CNT30348724

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6PL11|SKP1_ORYSJ, E-value = 2e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30671215	Eragrostis tef	Setaria viridis	7.67	27.57	98.51	67	forward
CNT30317831	Eragrostis tef	Corylus avellana	16.49	29.45	85.42	144	forward
CNT30303844	Eragrostis tef	Triticum aestivum	7.67	27.13	97.01	67	forward
CNT30589619	Eragrostis tef	Musa acuminata	12.03	41.02	86.67	105	forward
CNT30555334	Eragrostis tef	Oryza glaberrima	13.29	35.37	94.83	116	forward
CNT30666847	Eragrostis tef	Triticum dicoccoides	7.67	26.91	97.01	67	forward
CNT3059890	Eragrostis tef	Arabidopsis lyrata	16.49	20.03	80.56	144	forward
CNT30137317	Eragrostis tef	Lolium perenne	7.45	21.67	96.92	65	forward
CNT309022	Eragrostis tef	Zea mays	6.53	26.27	89.47	57	forward
CNT30686076	Eragrostis tef	Triticum urartu	15.69	48.75	96.35	137	forward
CNT30592775	Eragrostis tef	Eragrostis curvula	8.82	31.3	88.31	77	forward
CNT3049296	Eragrostis tef	Cucumis sativus	10.19	37.39	84.27	89	forward

Expression of CNT30348724

Peptides detected in this lncRNA

>peptide 1 (99 aa)
MRSKSVAWSTLTKSASQFLRSSPPEAEAEAEALAGALSLLSSDLAAAAAAWTCLLQYSMTLERILELTLGRGMLLSAQSSSIMWRMVCDSMATASSTSNS

Sequence

>CNT30348724
GTTCCTCATGAATGCTCTTGAAAGCAACAGATCAGATTGCCATATGTCCACTTGTTCTATATCAGTACTAGTGAACTTATGACACATAGATGGTCTAATA
AATAACCAACAAAACAACAGGAGATAATATCCACAATCAGGCCCAATAGTAAATCTAATCTAAAGCAATGTAATAACACAAATGCAGAGGAAAAGGCAGA
TGCGCGCACCTCTATAAAGGGTACAATGCAATGAAATCAGCAAGGAATTGGTACACAATCTGACCCCTTATAGTGAATTAATTATCAACATGGAATGAGA
CGATGTCACGCACAAGCAAATAGGTATGGACGGAAACAGGTACACTAAAATCAACACACTAGACGACTAGACGAGAAGTATAGTCAATATCCCACATTGG
CCGCGATGACATTGCAACACGATTAAGCGTCTACTGCTACATTATGTAGGCGTATAATACTCAAACTAAACAAAGAATTGATCTAAATGGGACAGAAATG
GCCACAGATCTAGAAAGAAAAGGAACTAGGGTTGGGGATGATGGAGGAGAGCAGATGGAGTAGGCTACCAGGATGAGGTCGAAGAGCGTGGCCTGGTCGA
CCTTGACGAAGTCGGCGTCCCAGTTCTTGAGGTCGTCGCCCCCGGAGGCGGAGGCGGAGGCGGAGGCGTTGGCGGGAGCGCTGTCGTTGTTGTCGTCGGA
CTTGGCTGCGGCTGCGGCGGCGTGGACGTGCTTGTTGCAGTACTCGATGACCTTGGAGAGGATCTTGGAGTTGACGTTGGGGAGGGGGATGCTGTTGTCG
GCGCAGTCGTCCTCGATCATGTGGCGGATGGTCTGCGACTCCATGGCGACCGCCTCCTCAACCTCGAACTCCT