Detailed information on CNT30347540


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84VG1|CHMP1_ORYSJ, E-value = 9e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Eragrostis tefSetaria viridis20.96109.2588.71248forward
CNT30513024Eragrostis tefJuglans regia17.2427.3885.78204forward
CNT30371693Eragrostis tefArabidopsis thaliana10.0621.9284.03119forward
CNT30306600Eragrostis tefTriticum aestivum15.7258.6893.01186forward
CNT3085000Eragrostis tefVigna radiata45.3119.0883.77536forward
CNT30554195Eragrostis tefOryza glaberrima52.5820.4188.26622forward
CNT30254428Eragrostis tefAvena sativa19.2742.4694.3228forward
CNT30669382Eragrostis tefTriticum dicoccoides20.9641.6195.16248forward
CNT3060118Eragrostis tefArabidopsis lyrata10.0640.4886.55119forward
CNT30141866Eragrostis tefLolium perenne49.295.7288.49582forward
CNT30368840Eragrostis tefSorghum bicolor17.557.6698.07207forward
CNT30370517Eragrostis tefOryza glumipatula18.6844.2996.83221forward
CNT30705067Eragrostis tefPrunus avium21.325.8583.33252forward
CNT30116955Eragrostis tefOryza nivara52.5878.8388.42622forward
CNT30111719Eragrostis tefFicus carica39.2251.3382.33464forward

Expression of CNT30347540

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MGDFVEAFGLGELDSIFDRGRGRRRHGLGDDTAKQRAAVWVRKGDCVW

>peptide 2 (58 aa)
MRAPSMLPFSIAFFTLSFCSFSSFSHLRACRCSDLDVNLRSKIWFISFSGFPIAARRS*

>peptide 3 (88 aa)
MRLLTSVSGVEREVDPAMAPSMNSACTSMLTNWRSNWSMVSDIFWRFPVLSAESRDLTMDCMDLPMTCILACVSRRATTASRREARRR*

Sequence

>CNT30347540
CCCCCCCCCCCCCCCCCCACACACACACACAATGCTAAGGTTCCCTGCGGTCCGCCTGCACTAGGTTAGGGAGCTGGGGATAATAGCTCCTCCGCATCCC
AAGCGCGCTGCCTTCCTAACCGTGCAACACTAAGTAATCCAAGCCAATCCACATTATATGAGCACCCTAACCACCTCGACTCATTATGTAGCATAAGAGT
ATCGACACCACAATTACGATATACTATAACAGTATTCAACACCATCAGTAGATGCAACTTCAGGACGGATTTCAAGCGTACATGTACTGTTATCACCTGA
GAGGCTGAAGCCTGAAAAGCGCTCAGCCGCGAGCCTTGAGCTCGGCGAGGCGGCGAGAGAGGTCATCCTCATCGACCTTCTCCTTATCCTTAGCAGCAGG
GATGGCGTGCGCGGCGGCCTGCGGCAGGCCAACAGAGACCTCTAGGCCGTAGTCGTCTGCGACCTGCTGCATGAGGCTGTTGACTTCGGTCTCTGGCGTG
GAGAGGGAGGTGGACCCCGCCATGGCGCCCTCCATGAACTCGGCCTGCACCTCCATGTTGACGAACTGGCGCTCGAACTGGTCCATGGTCTCGGACATCT
TCTGGAGGTTTCCGGTGTTGAGCGCGGAGTCGAGAGACTTGACGATGGACTGCATGGACCTGCCGATGACCTGCATCTTGGCCTGCGTGTCGAGGCGGGC
GACGACGGCGTCGAGGCGGGAGGCGAGGCGGAGGTAGTTCATGTGCTCGGTGCGCTTGCGGATGGCGTTCTCGGCGTAGATGCGGGCGCCGTCCATGTTG
CCCTTCTCGATCGCCTTTTTCACCTTAAGCTTCTGCTCCTTCTCCTCCTTCTCGCACTTGCGCGCCTGCCGCTGCAGCGACTTGGACGTGAACTTGAGGT
CGAAGATCTGGTTCATCAGCTTCTCCGGGTTCCCCATCGCTGCGCGCCGTAGCTAGGACGGATCTGGGATTTGGCTAGGGTTTGGGAGAGATTGGGAGGA
GATCAGGGTGGGGAATCGGGGAGGCGAGGAGGAGAACGAATGGGGGATTTTGTGGAGGCGTTCGGGTTGGGGGAGTTGGATTCGATTTTTGATCGGGGAC
GGGGGAGACGACGACACGGTTTGGGGGACGACACGGCTAAGCAACGCGCTGCCGTTTGGGTTAGGAAGGGTGACTGCGTGTGG