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Detailed information on CNT30346527


BLAST search results

BLAST vs Swiss-Prot:
sp|Q99285|H2B_PEA, E-value = 1e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Eragrostis tefOryza sativa83.8927.9697.74177forward
CNT30675682Eragrostis tefSetaria viridis83.8939.0796.05177forward
CNT30522940Eragrostis tefSetaria italica83.8925.1498.31177forward
CNT30315505Eragrostis tefCorylus avellana75.3634.7987.42159forward
CNT30518188Eragrostis tefJuglans regia83.8920.0985.31177forward
CNT30702570Eragrostis tefQuercus lobata52.132289.09110forward
CNT30618877Eragrostis tefSesamum indicum83.8922.4984.18177forward
CNT3072234Eragrostis tefQuercus suber53.5517.9483.19113forward
CNT30379403Eragrostis tefManihot esculenta50.7119.0485.05107forward
CNT30526697Eragrostis tefPhaseolus vulgaris50.7140.6886.92107forward
CNT30632073Eragrostis tefVigna unguiculata50.7114.2386.92107forward
CNT30196132Eragrostis tefPisum sativum50.7122.5786.92107forward
CNT30163372Eragrostis tefPistacia vera50.7118.5883.18107forward
CNT30179138Eragrostis tefSecale cereale83.4121.8196.59176forward
CNT30284074Eragrostis tefTriticum aestivum83.8929.6597.18177forward
CNT30220281Eragrostis tefHordeum vulgare79.6232.3797.62168forward
CNT30395424Eragrostis tefTriticum turgidum83.8936.896.05177forward
CNT30565715Eragrostis tefActinidia chinensis83.4122.4288.07176forward
CNT30586986Eragrostis tefMusa acuminata83.895089.27177forward
CNT3086649Eragrostis tefVigna radiata83.8923.7380.23177forward
CNT30552407Eragrostis tefOryza glaberrima83.8925.596.61177forward
CNT30171046Eragrostis tefTrifolium pratense23.714.089050forward
CNT30437440Eragrostis tefAegilops tauschii83.8934.6497.74177forward
CNT30241394Eragrostis tefAvena sativa83.8933.7196.61177forward
CNT30660053Eragrostis tefTriticum dicoccoides83.8926.796.61177forward
CNT30597299Eragrostis tefFraxinus excelsior83.4132.0679.55176forward
CNT30457276Eragrostis tefSaccharum spontaneum83.8916.699.44177forward
CNT30130711Eragrostis tefLolium perenne83.8926.0397.74177forward
CNT3015998Eragrostis tefZea mays70.6238.692.62149forward
CNT30606042Eragrostis tefGossypium raimondii50.7135.0883.18107forward
CNT30231835Eragrostis tefAnanas comosus52.1316.9295.45110forward
CNT3066775Eragrostis tefLeersia perrieri21.3311.7210045forward
CNT30205622Eragrostis tefHelianthus annuus25.1219.6388.6853forward
CNT30129800Eragrostis tefCorymbia citriodora83.8921.9988.14177forward
CNT30684130Eragrostis tefTriticum urartu83.8924.4198.31177forward
CNT30722585Eragrostis tefTriticum spelta83.8924.1596.61177forward
CNT30363575Eragrostis tefSorghum bicolor83.8919.297.18177forward
CNT30619778Eragrostis tefCajanus cajan52.1316.6287.27110forward
CNT30596761Eragrostis tefOryza meridionalis83.8922.4192.66177forward
CNT30360078Eragrostis tefLactuca sativa52.1313.8985.45110forward
CNT30369169Eragrostis tefOryza glumipatula83.4130.7296.02176forward
CNT30570929Eragrostis tefVitis vinifera83.4126.2380.68176forward
CNT3052765Eragrostis tefAmborella trichopoda52.1321.6588.18110forward
CNT30108786Eragrostis tefOryza longistaminata27.011.6892.9857forward
CNT30327286Eragrostis tefAsparagus officinalis83.8919.5889.27177forward
CNT30149313Eragrostis tefBrachypodium distachyon60.1936.3995.28127forward
CNT30103076Eragrostis tefOryza rufipogon75.3626.3793.71159forward
CNT30574682Eragrostis tefOryza barthii74.8823.196.84158forward
CNT30496069Eragrostis tefDigitaria exilis83.4122.0696.02176forward
CNT30176425Eragrostis tefVigna angularis50.7112.7785.98107forward
CNT30557628Eragrostis tefPanicum hallii76.328.998.76161forward
CNT30724478Eragrostis tefLupinus angustifolius20.857.390.9144forward
CNT3065708Eragrostis tefSelaginella moellendorffii50.7130.8484.11107forward
CNT30114697Eragrostis tefEutrema salsugineum52.1317.9481.82110forward

Expression of CNT30346527

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMMDMALEEMPMSGWTCFSTLKM*

>peptide 2 (69 aa)
GLDLAGGDGGLLVVARELGGLAGELLEDVVDEGVHDGHGLGGDADVGVDLLQHLEDVDLFDKLICCYKWR

Sequence

>CNT30346527
GGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGCGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAG
TTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGACCTGCTTCAGCACCTTGAAGATGTAGATCTTTTCGACAAACTTATATGTTGTTA
CAAATGGCGGG