Detailed information on CNT303454


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41806|PSBQ2_MAIZE, E-value = 2e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671743Zea maysSetaria viridis56.6967.6186.11144forward
CNT30520717Zea maysSetaria italica96.8533.788.62246forward
CNT30179895Zea maysSecale cereale94.4990.2385.42240forward
CNT30351417Zea maysEragrostis tef76.3890.2393.3194forward
CNT30362913Zea maysSorghum bicolor96.0687.1496.31244forward

Expression of CNT303454

Peptides detected in this lncRNA

>peptide 1 (64 aa)
VLKSLPVSSLRLCFSSLGLEAMTVLRSFWTYGHAFLSMSGLRLMMSCADVFTLATASAGGSGCR*

>peptide 2 (83 aa)
GAEELAGELLEALLLLLGLGSDDGLEVVLDVRPRLLVDEWLEVDDVLRRRLHPRHRLRRRQRLQVEPLLQGEVEVPRLVRVQSP

Sequence

>CNT303454
TGGTGCTGAAGAGCTTGCCGGTGAGCTCCTTGAGGCTCTGCTTCTCCTCCTTGGGCTTGGAAGCGATGACGGTCTTGAGGTCGTTCTGGACGTACGGCCA
CGCCTTCTTGTCGATGAGTGGCTTGAGGTTGATGATGTCCTGCGCCGACGTCTTCACCCTCGCCACCGCCTCCGCCGGCGGCAGCGGCTGCAGGTAGAAC
CGCTCCTTCAAGGGGAGGTCGAAGTCCCTCGCCTGGTCAGAGTTCAGAGTCCCG