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Detailed information on CNT3034293


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7X9A0|RCA1_LARTR, E-value = 7e-36

BLAST vs NONCODE:
NONBRAT002426, E-value = 1e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617865Theobroma cacaoSesamum indicum40.7133.9593.4892forward
CNT3096945Theobroma cacaoSolanum tuberosum30.0924.9195.5968forward
CNT30564971Theobroma cacaoActinidia chinensis20.816.3297.8747forward
CNT30171766Theobroma cacaoTrifolium pratense56.6415.2989.84128forward
CNT30371341Theobroma cacaoOryza glumipatula35.8434.7686.4281forward
CNT30150829Theobroma cacaoBrachypodium distachyon37.1717.884.5284forward
CNT3039667Theobroma cacaoMarchantia polymorpha30.9730.9787.1470forward

Expression of CNT3034293

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRGAYNVEKSLPVTMMGTRGFSSLLYIPGSSTFSPS*

Sequence

>CNT3034293
CTGGTAGGTGCCCAGTAGAACTTCTCCATACGACCATCACGGATGAGAGGAGCATACAATGTTGAGAAATCGTTGCCGGTGACGATGATGGGGACACGAG
GATTCTCTTCCTTGTTGTACATACCAGGGAGCAGCACATTTTCCCCTTCCTGATGATATCAGCTGCCTCACGGTACCTTTGCCTGATCAACTTGGCGGGC
TCTCCTGCGTTTCCACTTTCCAATTC