Detailed information on CNT30341745


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520246Eragrostis tefSetaria italica36.4719.3689.01182forward
CNT30361377Eragrostis tefSorghum bicolor36.2716.0791.71181forward
CNT30596537Eragrostis tefOryza meridionalis39.4835.589.34197forward

Expression of CNT30341745

Peptides detected in this lncRNA

>peptide 1 (99 aa)
MSVTYAAVQQQYVHGCYIDMIRTSPWFCSVEGSISSVVGLDLPALVVTLAPFPEHDGGAVVDAAVILVTMKGVEVEVDVVHHPDAAEAVADVAALGPHHR

>peptide 2 (60 aa)
MLHRHDTYISMVLFRRGLNLISSRAGSSSAGCHPRTIPRARRWCRRGRRRDPCHHERRRS*

>peptide 3 (31 aa)
LRKRVRALKISDIGSIVIYCYTHTTATYTRP*

Sequence

>CNT30341745
TTACGTAAAAGAGTCAGGGCACTGAAGATATCAGATATTGGTAGTATTGTAATTTATTGTTATACACATACAACTGCGACATATACACGACCATGATTAA
TTAAGCAGCCCGTCTCCTACTTTATCGATGCAGTAGGCAGGACAAGGCTCAATTATTATCGTGTTATAAGATACACAGCGAAATCGATCGAGTAGCTTAT
GTCGGTCACATACGCTGCAGTCCAGCAGCAGTACGTACACGGATGCTACATAGACATGATACGTACATCTCCATGGTTTTGTTCCGTAGAGGGCTCAATC
TCATCAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCACCCTCGCACCATTCCCAGAGCACGACGGTGGTGCCGTCGTGGACGCCGCCGTGATCCTTG
TCACCATGAAAGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATCCTGATGCAGCGGAAGCCGTGGCCGACGTCGCGGCTCTCGGTCCACATCACCGAC