Detailed information on CNT30340732


BLAST search results

BLAST vs Swiss-Prot:
sp|B6TVL4|CAS_MAIZE, E-value = 1e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691563Eragrostis tefOryza sativa36.3941.6988.11143forward
CNT30364640Eragrostis tefSorghum bicolor35.6236.0885140forward
CNT30595766Eragrostis tefOryza meridionalis34.6147.8984.56136forward
CNT30100064Eragrostis tefOryza rufipogon32.3246.1888.19127forward
CNT30575377Eragrostis tefOryza barthii36.3965.687.41143forward

Expression of CNT30340732

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MSNTTQNNESTIVDSKQYKTATFVTAETGRDDGPDRRQEDVREERRPGGHDVVLGSQRRDGLHGGRGDGLGGVDDLGALLRR

>peptide 2 (39 aa)
GKLWHSGFGLVFVASHIDQNVILSGDLVQSLRRSQVTFS*

Sequence

>CNT30340732
GGGAAGCTGTGGCACTCCGGCTTTGGCCTTGTCTTTGTCGCTTCGCACATCGATCAGAACGTAATCTTGAGTGGTGATCTTGTCCAGAGCTTGCGCAGGA
GTCAGGTCACCTTTTCGTGACACACAATGCAGCAGCGTACTAGTGATGAGCAACACAACGCAGAACAACGAGAGCACCATTGTTGACAGCAAGCAATACA
AGACCGCTACCTTTGTAACCGCGGAGACCGGAAGAGACGATGGACCAGACCGGCGGCAGGAGGATGTACGCGAGGAACGCCGCCCCGGCGGCCACGACGT
AGTCCTCGGGAGCCAACGACGTGATGGTCTCCACGGTGGCCGAGGCGATGGGCTTGGCGGCGTCGATGACCTTGGTGCCCTGCTCCGCCGCGG