Detailed information on CNT30339854


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694964Eragrostis tefOryza sativa23.9113.5889.7788reverse complement
CNT30671922Eragrostis tefSetaria viridis35.0535.7398.45129reverse complement
CNT30520562Eragrostis tefSetaria italica24.7320.3198.991reverse complement
CNT30290233Eragrostis tefTriticum aestivum35.3331.6390130reverse complement
CNT30611008Eragrostis tefArabis alpina18.4825.6685.2968reverse complement
CNT30102685Eragrostis tefOryza rufipogon35.624.993.13131reverse complement
CNT30581140Eragrostis tefEchinochloa crusgalli35.3324.1695.38130reverse complement
CNT30118070Eragrostis tefOryza nivara22.2814.6789.0282reverse complement

Expression of CNT30339854

Peptides detected in this lncRNA

>peptide 1 (49 aa)
RADRRPRRVHARRHAGLRRRRPHPRRRHRARTQEHRRARPDHRLNPAVR*

>peptide 2 (44 aa)
GVQTGDPAGFTLADTLACGAVGHILGVGIVLGLKNTGALDQIIG*

>peptide 3 (29 aa)
MNFVSLMERLVPSYFNMYIVRASSCSNGP*

>peptide 4 (48 aa)
ACRPATPPGSRSPTRWPAAPSATSSASASCSDSRTPARSTRSSAKSGR*

>peptide 5 (46 aa)
MDHSFISCSSISLSLSLSLSRARARNNKRQHWVQSTRSELHGDFMGS

Sequence

>CNT30339854
GGCGTGCAGACCGGCGACCCCGCCGGGTTCACGCTCGCCGACACGCTGGCCTGCGGCGCCGTCGGCCACATCCTCGGCGTCGGCATCGTGCTCGGACTCA
AGAACACCGGCGCGCTCGACCAGATCATCGGCTAAATCCGGCCGTTAGATGAACTTTGTTTCTCTAATGGAACGATTGGTGCCAAGTTACTTTAACATGT
ACATTGTGCGTGCATCATCTTGTTCGAATGGACCATAGCTTTATTTCGTGTTCTTCGATCTCTCTCTCTCTCTCTCTCTCTCTCTCGCGCGCGCGCGCGC
GCAACAACAAACGGCAACATTGGGTACAGTCCACTCGGTCGGAATTACACGGAGATTTTATGGGGAGC