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Detailed information on CNT30338878


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DG05|PSAH_ORYSJ, E-value = 8e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693708Eragrostis tefOryza sativa2535.5887.69195forward
CNT30672419Eragrostis tefSetaria viridis21.4142.9392.22167forward
CNT30520974Eragrostis tefSetaria italica23.8522.692.47186forward
CNT30532753Eragrostis tefEucalyptus grandis13.2141.5382.52103forward
CNT30285918Eragrostis tefTriticum aestivum13.5922.5585.85106forward
CNT30591852Eragrostis tefMusa acuminata13.5925.4286.79106forward
CNT30435258Eragrostis tefAegilops tauschii20.1355.2884.71157forward
CNT30240454Eragrostis tefAvena sativa20.1344.687.9157forward
CNT30656050Eragrostis tefTriticum dicoccoides19.7425.0885.06154forward
CNT30131217Eragrostis tefLolium perenne13.8521.6490.74108forward
CNT3010986Eragrostis tefZea mays11.1526.9393.187forward
CNT30679870Eragrostis tefTriticum urartu19.7421.4285.06154forward
CNT30720193Eragrostis tefTriticum spelta20.1328.7584.71157forward
CNT30367620Eragrostis tefSorghum bicolor12.5625.4593.8898forward
CNT30370255Eragrostis tefOryza glumipatula17.3121.1994.07135forward
CNT30704201Eragrostis tefPrunus avium11.0333.284.8886forward
CNT30149479Eragrostis tefBrachypodium distachyon12.6925.7186.8799forward
CNT30101676Eragrostis tefOryza rufipogon20.5137.7487.5160forward
CNT30576447Eragrostis tefOryza barthii8.5922.3386.5767forward
CNT30496573Eragrostis tefDigitaria exilis35.2650.5586.55275forward
CNT30116867Eragrostis tefOryza nivara12.1839.4290.5395forward
CNT30604129Eragrostis tefOryza punctata17.3121.5392.59135forward

Expression of CNT30338878

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MCMHRRTAREEGLTASFLPEMELPARPFTATGWTETAAREAIARGLVCTAPGGYWC

>peptide 2 (92 aa)
MAIDPRTSGTVQVSRERKGEFNLDLAARALLRRQLRPLLDRQKVRRRVRADVGQQGAAAQQQELEQEAPLGERPGERLKELALQINTEIDSL*

>peptide 3 (56 aa)
MARARRSRTGPIARWCCGCPQGRSRRSCRRTWPPRRREACNDQPCACTGVRRGKKA*

>peptide 4 (37 aa)
GSIRTRNFSRNKDNTKNVLEDAQHQFTCMTTSTVLTA*

Sequence

>CNT30338878
TGGTTCCATTCGCACTAGAAACTTTAGTCGCAACAAAGATAACACAAAAAACGTTTTAGAAGACGCACAACATCAGTTTACTTGTATGACAACGAGTACA
GTATTAACAGCATAAATGGGCATGTTCCATGGCGATCGATCCGAGAACTAGCGGTACGGTACAAGTAAGCAGGGAAAGGAAGGGGGAATTCAATCTAGAT
CTTGCCGCGCGGGCCCTTCTGCGGCGGCAGCTGCGGCCCCTTCTTGATCGGCAGAAGGTCCGGCGACGCGTTCGCGCTGACGTAGGCCAGCAGGGAGCCG
CCGCCCAGCAGCAAGAACTTGAGCAGGAGGCCCCTCTTGGTGAACGGCCCGGCGAACGTCTCAAAGAACTTGCTCTGCAAATTAACACAGAAATTGACTC
GTTGTGAACGGTCCGGCCTCCCTTTGTGAACAACTAAGTGCACGGCGAAGAAGAACAGCACGCACCTGAAGAGGGTTGTATGGCGAGGGCGCGTCGGAGC
CGTACAGGTCCCATTGCCCGGTGGTGTTGCGGATGTCCTCAAGGTCGAAGTAGACGCTCTTGTCGCCGTACTTGGCCACCACGGCGGCGCGAGGCCTGTA
ACGATCAGCCATGTGCATGCACCGGCGTACGGCGCGGGAAGAAGGCCTGACGGCGAGCTTCCTGCCGGAGATGGAGCTGCCGGCGAGGCCCTTCACGGCC
ACGGGCTGGACGGAGACGGCGGCGAGGGAGGCCATTGCGCGCGGTTTGGTGTGTACAGCTCCTGGAGGATACTGGTGTGG