Detailed information on CNT30338549


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102896Eragrostis tefOryza rufipogon5.8627.191.3858forward
CNT30594786Eragrostis tefEragrostis curvula60.246.4287.75596forward

Expression of CNT30338549

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRLLKKGFMISFCELAYHIKIFLGVKMRNVQD*

>peptide 2 (43 aa)
MWRQQARGGNCTTCKNLMIPVMFLQVMQLLPQASCLPLPKLVR*

>peptide 3 (38 aa)
MDTGYSLHGATFNFLTSLIITPAGPPNISPFSLKSLFT*

>peptide 4 (87 aa)
GRPVPIVNAANNIRLPRLPPPLPTANPAVAYKLHHAPPSPSFLPSTTTSNLGFSAGDRPRDRVREGSIRYACGGSKLEVATAQLARI*

>peptide 5 (50 aa)
GDRCLLLMLQTTFGSHGCLRPSRLQIPRLPINSTTLLLPLPSFRPPPPLI*

Sequence

>CNT30338549
GGGGAGACCGGTGCCTATTGTTAATGCTGCAAACAACATTCGGCTCCCACGGCTGCCTCCGCCCCTCCCGACTGCAAATCCCGCGGTTGCCTATAAACTC
CACCACGCTCCTCCTTCCCCTTCCTTCCTTCCGTCCACCACCACCTCTAATCTAGGGTTTAGTGCGGGAGATCGACCTCGCGACAGAGTGAGGGAAGGAT
CCATCAGATATGCATGTGGAGGCAGCAAGCTAGAGGTGGCAACTGCACAACTTGCAAGAATTTGATGATACCTGTGATGTTCTTGCAAGTTATGCAGTTG
CTGCCTCAAGCTTCCTGCCTCCCTTTGCCAAAGCTAGTGAGATAAAATGATTTCAGTTAGCATAGATGGACTTTGAGATCATAATTTCGATACTTCAGCA
TACAGAATCAAGAGATAACAATACAACCTGCAATCAAATACCATGAGACTACTTAAAAAAGGATTTATGATATCATTTTGTGAGCTAGCATATCATATCA
AGATATTTTTGGGTGTGAAGATGCGTAACGTTCAAGACTAATTAAGTACATGGATACTGGTTACTCCTTACATGGTGCCACATTCAATTTCTTGACATCA
TTAATTATTACTCCTGCTGGTCCCCCAAATATAAGTCCATTTAGCTTGAAATCCTTGTTTACTTAACTAAAAGGAAAAAGTCCTATTTGCCTCCCTCAAC
TCTTATAGAAGGTGTGACTTTTACTTCCAATTACAAAACTGGGTAGCCTGACTTCCTCAACTCTTCTCACTTCAGTTTACCACCCTCAGCGGTTTTCAGA
GCGGTATTAGCCGATTAGTAGGAGAGAGAAAGCGAGAGAAGAAAAAGAGAAAGAAGAGGTGACATGGCAACTGACGTGTGGGACCCATTGTGCTATGTCA
GACAAAACCATTCTGAAAACCGTCGAGGGAGGTAAATTGAAGTGAGAGGAGTCGAGGGAGTCAGGCTACCCGGTTTTGTAATTAGAGGTA