Detailed information on CNT30334962


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318212Cynara cardunculusCorylus avellana49.1368.5694.631843reverse complement
CNT30702609Cynara cardunculusQuercus lobata48.8499.5794.271832forward
CNT30506608Cynara cardunculusNicotiana attenuata49.472.193.741853forward
CNT30638988Cynara cardunculusCapsicum annuum48.5595.5995.171821reverse complement
CNT30210115Cynara cardunculusHelianthus annuus49.0825.8493.051841reverse complement
CNT30422282Cynara cardunculusPapaver somniferum49.2158.4994.311846reverse complement

Expression of CNT30334962

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLSQLFVFHKSKNFTSXYEIRMPPTVPVNHYFDPEGQRNRTEIL*

>peptide 2 (44 aa)
MTTGRINQVAFLFDAARHARTSQDMTNYHFREARTLNEGRCRIV*

>peptide 3 (63 aa)
MPRCMTHITMSYTHMTGYWPRRAQPIVLRTRINGLPLPPYMTRITMSSASVTGKSLCNQSCFS*

>peptide 4 (62 aa)
MLQGPHHRCKCTNKVDHETRFKVHPTPHERRMTKRDIHKPTRYHRLGMQHRKPTKCSRQKKP*

>peptide 5 (73 aa)
MVFERPRPVCASRTGRHEARALLMFCFPWHMPCRGLFMCQRDVHDASKRDTMHARRRGITSIGLTPDPLDARL*

>peptide 6 (71 aa)
MLKTKEALNTTEEACTRGCCCASRQPTTCNKPNTTHAPLGSIFPKTIQLVATHPTQKLSKQPKAKTIPRMH*

>peptide 7 (53 aa)
MIRFSGILATSPAANRPRRRDPNTSPXHSIGRSDGRCVQRQGRSQSELMTRAY*

>peptide 8 (44 aa)
MKFQRFXGPVGQXYILVEYISVACVRPRTSKGLTDLLLPQTSVA*

>peptide 9 (61 aa)
MPQKGTPCTHAGEALRASDSHPTPSMPGCDYVSTGRSAVQASTMILPLVHLQKPCYDFSFL*

>peptide 10 (53 aa)
RASVEGDSFLGQLHQWHGRPVSAPDETNPHQGVVVWGDVMLHAQADVPSAEWF*

>peptide 11 (97 aa)
PCVRRRGLLFRPTAPMARETSLRPRRNESPSRSRGLGRRDASRPGRRALGRMVLSATCIQKLDGSQDSAIHTKYRILLHSSSMREPRYPLPIVVYGF*

>peptide 12 (79 aa)
MRFANGATRGTRPSNVLFSLAHAMPGFVYVPTRRPRCLKKGHHARTPARHYEHRTHTRPPRCPAVITCPQVVLLCRLRQ*

>peptide 13 (86 aa)
MHDPHHHVLGTYNRLLASVCVTNRASNKDQQAVLATVHDPHHHVLSIDHWHGPVQPIVLWLRFNGMPASKNRDETLPQCITQITTS*

>peptide 14 (86 aa)
MHDPHHHVLYTYDRLLASACATNRASNKDQWATLATVHDPHHHVLGIGHWQEPVQPIVFQLRFNGLPASKNKEETLPQCITHITTS*

>peptide 15 (29 aa)
MVHRILQFTPSIAFCYILHRCVSRDIRCR*

>peptide 16 (31 aa)
MTGHWHGLVQPIVLQTRINGLAINSSNFSSI*

>peptide 17 (32 aa)
MKYECPRLSLLIITSIPKANVIGPKSYDVIPC*

>peptide 18 (36 aa)
MHHPHHHVLGIYDRSLARACATNRASDKDQRAGHQF*

>peptide 19 (36 aa)
MQDRVRPMPTSGSVYKRASDASRATSSMQMHQQGGS*

>peptide 20 (38 aa)
MHPFQKSGFVARISSRITMVIRVTDTIKQTITDLMSHS*

>peptide 21 (38 aa)
MLPSLDVVAISQAPSSKSNPNSPSXVTTIVGHYPTIQS*

Sequence

>CNT30334962
CCGTGCGTCCGTCGAAGGGGACTCCTTTTTAGGCCAACTGCACCAATGGCACGGGAGACCAGTCTCCGCCCCAGACGAAACGAATCCCCATCAAGGAGTC
GTGGTCTGGGGCGACGTGATGCTTCACGCCCAGGCAGACGTGCCCTCGGCCGAATGGTTTTGAGCGCAACTTGCATTCAAAAACTCGATGGTTCACAGGA
TTCTGCAATTCACACCAAGTATCGCATTTTGCTACATTCTTCATCGATGCGTGAGCCGAGATATCCGTTGCCGATAGTCGTTTATGGTTTTTGAGAGGCC
GAGGCCCGTATGCGCTTCGCGAACGGGGCGACACGAGGCACGCGCCCTTCTAATGTTTTGTTTTCCTTGGCACATGCCATGCCGGGGTTTGTTTATGTGC
CAACGCGACGTCCACGATGCCTCAAAAAGGGACACCATGCACGCACGCCGGCGAGGCATTACGAGCATCGGACTCACACCCGACCCCCTCGATGCCCGGC
TGTGATTACGTGTCCACAGGTCGTTCTGCTGTGCAGGCTTCGACAATGATCCTTCCGCTGGTTCACCTACAGAAACCTTGTTACGACTTCTCCTTCCTCT
AAATGATAAGGTTTAGTGGAATTCTCGCGACGTCACCGGCGGCGAACCGCCCACGTCGCCGCGATCCTAACACTTCACCGRACCATTCAATCGGTAGGAG
CGACGGGCGGTGTGTACAAAGGCAGGGACGTAGTCAAAGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCRTTTAAGACCAACAATTGCAATGATCT
ATCCCCATCACRATGAAATTTCAAAGATTTCYCGGGCCTGTCGGCCAAGRCTATATACTCGTTGAATACATCAGTGTAGCGTGCGTGCGGCCCAGAACAT
CTAAGGGCCTCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTGAAAGGCCATAGTCCCTCTAAGAAGCTGGCCGTGGAGGGATACCTCCACATAGCT
AGTTAGCAGGCTGAGGTCTCGTTCGTTAGCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAATGGCCATGCACCACCACCCATAGAATCAAGAAAG
AGCTCTCTGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCTTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCTG
TCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCYCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAACAGAGTCTTAAAAGCAACATCCG
CTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGASGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGM
AAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTRAYTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTTCGA
TCCCGAAGGCCAACGTAATAGGACCGAAATCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGTTTTGAGCACTCTAAGTTCTTCAAAG
TAACAGCGCTGGAGGCACGACCCAGCCAATTAAGGCCAGGAGCGCATCACCGACAGAAGGGACGAGTAAACCGGTGCACACCTGAAGGCGGACCGGCCGA
CCCAACCCAAAGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTC
CAATRGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGGCTCGTTTGAGCCCGGTATTGTTATTTATTGTCACTACTTCCCCGTGTCAG
GATTGGGTAATTTGCACGCATGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTCCGTCTTCGAAATCGAACCCTAATTCTCCGTCACYCGTCACC
ACCATAGTAGGCCACTATCCTACCATCCAAAGTTGATAGGGCAGAAATTTGAATGATGCGTTGCCGGCACGAGGGCTGTGTGATCCGTCGAGTTATCATG
AATCATCACAGCAACGGGTAGAGCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTA
CTATGGTTATCCGAGTAACAGATACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGTAGTTTCACAGTCTGAATTTGTCCATACTTACACATGC
ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCATTCCTCTTTGACGCAGCCCGTCACGCAAGGACAAGCCAAGACATG
ACGAACTATCATTTTAGAGAAGCGAGAACGCTTAACGAGGGCAGATGCAGGATCGTGTAAGACCCATGCCCACATCAGGTTCCGTATACAAGAGAGCAAG
CGATGCTTCAAGGGCCACATCATCGATGCAAATGCACCAACAAGGTGGATCATGAAACCCGCTTCAAGGTTCATCCCACGCCACATGAACGACGCATGAC
GAAAAGGGACATCCATAAACCCACACGTTACCATCGGTTAGGTATGCAACACAGGAAACCCACAAAATGCTCAAGACAAAAGAAGCCTTGAACACAACTG
AAGAGGCATGCACGCGTGGATGTTGCTGCGCAAGCAGACAGCCAACCACCTGTAACAAACCAAACACCACTCATGCACCTTTAGGGTCGATATTCCCGAA
AACCATCCAACTAGTAGCGACCCACCCAACTCAAAAGTTGAGTAAGCAACCAAAAGCCAAAACAATCCCCAGAATGCATTGAACAATGCGAAAATAACAA
TGAGAACCATGAATCCAACATGCCTCGATGCATGACCCACATCACCATGTCCTATACACATATGACCGGTTACTGGCCTCGGCGTGCGCAACCAATCGTG
CTTCGAACAAGGATCAATGGGCTACCCTTGCCACCGTACATGACCCGCATCACCATGTCCTCGGCATCGGTCACTGGCAAGAGCCTGTGCAACCAATCGT
GTTTCAGTTGAGGTTCAACGGGCTGCCCGCTAGCAAAAACAAAGAAGAAACCTTGCCTCAATGCATCACCCACATCACCACGTCCTAGGCATATATGACC
GGTCACTGGCACGGGCTTGTGCAACCAATCGTGCTTCAGACAAGGATCAACGGGCTGGCCATCAATTCTAGCAACTTTTCATCGATATAGGATCATTCTC
GTTGGGTCCGATGCATGACCCGCATCACCATGTCCTAGGCACATATAACCGGTTACTGGCCTCGGTGTGCGTAACCAATCGTGCTTCGAACAAGGATCAA
CAAGCTGTCCTTGCCACCGTGCATGACCCGCATCACCATGTCCTCAGCATCGATCACTGGCACGGGCCTGTGCAACCAATCGTGCTTTGGTTGAGGTTCA
ATGGGATGCCCGCTAGCAAAAACAGAGATGAAACCTTGCCTCAATGCATCACCCAAATCACCACGTCCTAGGCACATATGACCGCTGACACGGGCCTGTG
CAACCAATCGTGCTTCGAACGAGGATCAACGGGCTGGCCATCAATTCACTAGCAACTTTTCATCGATATAGGATCATTCTCGTTGGGTCCGATGGATGAC
CCGCATCACCATGTCCTAGGCACATATGACCGGTTACTGGCCTCGGCATGC