Detailed information on CNT30331222


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 2e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678075Dioscorea rotundataSetaria viridis23.6936.2683.87186forward
CNT30712512Dioscorea rotundataGlycine max11.2122.8686.3688forward
CNT30223457Dioscorea rotundataHordeum vulgare13.2534.985.58104forward
CNT30586413Dioscorea rotundataMusa acuminata9.328.2987.6773forward
CNT30137220Dioscorea rotundataLolium perenne22.812.1983.24179forward
CNT30154709Dioscorea rotundataPrunus persica12.4831.1185.7198forward
CNT30706776Dioscorea rotundataPrunus avium12.9936.6987.25102forward
CNT30575580Dioscorea rotundataOryza barthii14.0132.8485.45110forward

Expression of CNT30331222

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MHACTRTYIHIHVNITTTFFSQYSAEGICS*

>peptide 2 (46 aa)
LKPYIEYQRSHHNPNNIHNHLNKLKLRPPIHACMHAHVRTSTSTLT*

>peptide 3 (39 aa)
MTISSTRAFQTEMPERPKEPVGSPVEMRRRRQATVEPRS*

>peptide 4 (70 aa)
MRMRNEKQLINKTSKSTTNQRTNPINPLIIPRPAHQRRSKAHRRVHRSSDVSSDDETNGYRCYSSQSSSL*

Sequence

>CNT30331222
CCTCAAACCATACATAGAATACCAAAGATCTCACCACAACCCAAACAACATACATAACCACTTAAACAAACTCAAACTACGTCCACCCATCCACGCATGC
ATGCATGCACACGTACGTACATCCACATCCACGTTAACATAACCACCACCTTTTTCTCTCAATATTCAGCGGAAGGAATTTGCTCATGAGAATGAGAAAT
GAAAAACAACTCATAAACAAGACCAGCAAGTCCACCACCAATCAAAGGACCAACCCAATAAACCCACTGATTATCCCAAGACCAGCTCACCAGCGACGGT
CCAAAGCTCACCGCCGGGTTCATCGAAGCTCCGATGTTAGCTCCGACGATGAAACCAATGGCTATAGGTGCTATAGTTCCCAAAGTTCCTCTCTTTGAAT
CAATGGCTGTGGCGTAGACGGTGTAGACAAGGCCAAACGTCATGACGATCTCCAGCACGAGAGCGTTCCAGACGGAGATGCCGGAGAGGCCGAAGGAGCC
GGTGGGTTCGCCGGTGGAGATGCGGAGGAGGAGGCAGGCGACGGTGGAGCCGAGGAGTTGAGCTATCCAGTAGAGGATGCCGCGGAGAAGGGTTATGTTG
CCGCCGACGAAGATAAGAGTTGAGATGAACTCGGCCAACGCGGCCTTGAGCGCACTCGGGTGAGTCGCCTCCTCCCGAGTTCCGATCGCTATCCTCGAGA
TCGGCATTCTTTTGATCCTCTAATCAACACCGTCCAAAATATAAACACTAATTAAATAAATATAAATAAATAACCCAAAACTCTC