Detailed information on CNT30317831


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516841Corylus avellanaJuglans regia41.3124.9493.07202forward
CNT30500911Corylus avellanaCoffea canephora22.4921.2485.45110forward
CNT30555334Corylus avellanaOryza glaberrima24.3436.2886.55119forward
CNT3059890Corylus avellanaArabidopsis lyrata30.2720.5883.78148forward
CNT30143075Corylus avellanaLolium perenne27.8112.9383.82136forward
CNT30650073Corylus avellanaRosa chinensis25.7721.6984.92126forward
CNT30686076Corylus avellanaTriticum urartu31.2954.4586.93153forward
CNT30348724Corylus avellanaEragrostis tef29.4516.4985.42144forward
CNT30112966Corylus avellanaFicus carica21.6815.8293.4106forward
CNT3049296Corylus avellanaCucumis sativus21.2743.785.58104forward

Expression of CNT30317831

Peptides detected in this lncRNA

>peptide 1 (33 aa)
QDEIEEGRRRRRWSVLRTRRLLWGPRRASCSTR*

>peptide 2 (62 aa)
RMRSKRVVVGGGGAFFGRGGCFGGLDVLLAVLDDLGEDLARHVRERDAIVGAVVLDHVLYRL*

>peptide 3 (67 aa)
MTLERILLVTFGSGMPLSAQSSSIMCFIVCDSRATASSTSKVSPSELFRVIFLPDDIVLMRYSKHKP*

Sequence

>CNT30317831
CCAGGATGAGATCGAAGAGGGTCGTCGTCGGAGGAGGTGGAGCGTTCTTCGGACGCGGCGGCTGCTTTGGGGGCCTCGACGTGCTTCTTGCAGTACTCGA
TGACCTTGGAGAGGATCTTGCTCGTCACGTTCGGGAGCGGGATGCCATTGTCGGCGCAGTCGTCCTCGATCATGTGCTTTATCGTTTGTGACTCCAGAGC
CACCGCCTCCTCCACCTCGAAGGTCTCTCCATCCGAGCTCTTCAGAGTTATCTTCCTCCCTGACGACATCGTTTTGATGAGGTATTCAAAACACAAACCC
TAGAATTGGACTTCGAGAAGTCGCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAAAGAGAGAGGGATCGGATAAAGTCTGCCACTATACTGAGAG
ACGACAAAAATATTTGAGCGAGTGAAACAAAATTTATTGAAATATTACCTTTATTTATAGAATAAAATATTATACGTCTATTAAATTTC