Detailed information on CNT30316271


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30503107Corylus avellanaNicotiana attenuata17.9828.5786.3666forward
CNT30216754Corylus avellanaKalanchoe fedtschenkoi28.8824.0988.68106forward
CNT30652166Corylus avellanaRosa chinensis29.714.8591.74109forward
CNT30369646Corylus avellanaOryza glumipatula20.1613.9187.8474forward
CNT30577459Corylus avellanaOryza barthii25.8918.4584.2195forward
CNT30583395Corylus avellanaEchinochloa crusgalli27.259.3882100forward
CNT30115905Corylus avellanaOryza nivara20.1613.8387.8474forward

Expression of CNT30316271

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MRVSSKPGAYSLVGFRCLTGVLQACSNTLHRQDEGILQTRGILACWVQVHKFISCFAYFHKLLGDVWTHLHKVVWIP

>peptide 2 (77 aa)
LLVHIIYGFLGQILCREKQQKEKHRNHRCLTGVLQACSNTLHRQDEGILQTRGILACWVQVSNRCSASLQQYPSSSR*

>peptide 3 (40 aa)
MRVSSKPGAYSLVGFRFTSSSVALLISINSLEMCGRTFTR*

>peptide 4 (45 aa)
TSGAYNLWFLGANSLQRKTAKRKTQKSQVSNRCSASLQQYPSSSR*

Sequence

>CNT30316271
CACTTCTGGTGCATATAATTTATGGTTTCTTGGGGCAAATTCTCTGCAGAGAAAAACAGCAAAAAGAAAAACACAGAAATCACAGGTGTCTAACCGGTGT
TCTGCAAGCCTGCAGCAATACCCTTCATCGTCAAGATGAGGGTATCCTCCAAACCAGGGGCATACTCGCTTGTTGGGTTCAGGTGTCTAACCGGTGTTCT
GCAAGCCTGCAGCAATACCCTTCATCGTCAAGATGAGGGTATCCTCCAAACCAGGGGCATACTCGCTTGTTGGGTTCAGGTTCACAAGTTCATCAGTTGC
TTTGCTTATTTCCATAAACTCCTTGGAGATGTGTGGACGCACCTTCACAAGGTAGTTTGGATCCCGG