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Detailed information on CNT30316236


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000778, E-value = 3e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675350Corylus avellanaSetaria viridis33.1273.0884.87152forward
CNT30532843Corylus avellanaEucalyptus grandis46.1928.9688.21212forward
CNT30547574Corylus avellanaIpomoea triloba21.1327.3293.8197forward
CNT30512951Corylus avellanaJuglans regia51.4230.2691.95236forward
CNT30373394Corylus avellanaArabidopsis thaliana52.5142.8885.06241forward
CNT30276060Corylus avellanaChenopodium quinoa51.237.0788.09235forward
CNT3019597Corylus avellanaCitrullus lanatus44.0127.0185.64202forward
CNT30728649Corylus avellanaCorchorus capsularis32.6813.7785.33150forward
CNT30379936Corylus avellanaManihot esculenta37.9152.187.93174forward
CNT30405832Corylus avellanaBeta vulgaris28.7616.4683.33132forward
CNT30488117Corylus avellanaOlea europaea42.9240.3789.34197forward
CNT30711584Corylus avellanaGlycine max53.8135.0987.04247forward
CNT3045373Corylus avellanaPrunus dulcis47.9328.0692.27220forward
CNT30191304Corylus avellanaSecale cereale53.8118.9985.83247forward
CNT30300473Corylus avellanaTriticum aestivum53.8125.5283.81247forward
CNT30224354Corylus avellanaHordeum vulgare53.8147.5984.21247forward
CNT30395070Corylus avellanaTriticum turgidum53.8132.2984.21247forward
CNT30561656Corylus avellanaActinidia chinensis50.7616.6488.41233forward
CNT3085191Corylus avellanaVigna radiata45.7529.2987.62210forward
CNT30510505Corylus avellanaSolanum lycopersicum48.5820.5391.03223forward
CNT30552635Corylus avellanaOryza glaberrima53.8123.887.04247forward
CNT30143941Corylus avellanaMedicago truncatula38.3439.2984.09176forward
CNT30440797Corylus avellanaAegilops tauschii53.8133.9383.81247forward
CNT30313757Corylus avellanaCamelina sativa50.9826.6884.19234forward
CNT3059659Corylus avellanaArabidopsis lyrata47.7150.4682.19219forward
CNT30612508Corylus avellanaArabis alpina51.29.2684.68235forward
CNT30135610Corylus avellanaLolium perenne30.9416.7888.03142forward
CNT3014085Corylus avellanaZea mays51.8539.0285.71238forward
CNT30605685Corylus avellanaGossypium raimondii53.1631.9488.11244forward
CNT30203835Corylus avellanaHelianthus annuus42.2740.4281.44194forward
CNT30684236Corylus avellanaTriticum urartu51.4228.7183.47236forward
CNT30722731Corylus avellanaTriticum spelta20.041882.6192forward
CNT30345702Corylus avellanaEragrostis tef37.6921.4186.13173forward
CNT30361520Corylus avellanaSorghum bicolor42.9228.883.76197forward
CNT30596122Corylus avellanaOryza meridionalis54.2535.9883.94249forward
CNT30359537Corylus avellanaLactuca sativa28.9820.1886.47133forward
CNT30369654Corylus avellanaOryza glumipatula53.8128.0787.45247forward
CNT30154011Corylus avellanaPrunus persica21.3534.8890.8298forward
CNT30107537Corylus avellanaOryza longistaminata53.8126.8887.45247forward
CNT30332479Corylus avellanaDioscorea rotundata24.6239.9381.42113forward
CNT30149525Corylus avellanaBrachypodium distachyon25.4938.7482.05117forward
CNT30100253Corylus avellanaOryza rufipogon53.8122.4187.04247forward
CNT30575129Corylus avellanaOryza barthii53.8130.3487.04247forward
CNT30497701Corylus avellanaDigitaria exilis44.2362.4687.68203forward
CNT30116094Corylus avellanaOryza nivara53.8128.0787.04247forward
CNT30604019Corylus avellanaOryza punctata54.2573.6784.34249forward
CNT3050899Corylus avellanaCucumis sativus37.6968.6582.66173forward

Expression of CNT30316236

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MKNNITDFKADTPHVFFRQCTFLRCPLEPCNNRILNFIQVLNSLTHINH

>peptide 2 (44 aa)
QVEKPGIQLPMDPMPSCPSDQRHIEGKLALRLQPSKCLRIRKIQ*

>peptide 3 (30 aa)
HKLRSLGSSFQWIRCHHVPVIKDTLRESLP*

Sequence

>CNT30316236
CACAAGTTGAGAAGCCTGGGATCCAGCTTCCAATGGATCCGATGCCATCATGTCCCAGTGATCAAAGACACATTGAGGGAAAGCTTGCCCTGAGGTTGCA
GCCCTCAAAGTGCTTGAGAATCCGAAAGATTCAATGACAGGAAGGTATGCCTTGATGTTGTACAGTGGGGTACCAGGCCTCTGAATTTCCTCAAACACAT
GCCCACGTTTCTGGCTCAAGAAGCCTGGGCTTGGCTGTAATCTGGGAAGCATAAATAACCCTCCTAGCAGTTGGAATCACCTGACCACCTCCTCTGTGAA
TGGCATCAGCATGAAGAACAACATCACAGACTTCAAAGCAGATACCCCTCATGTTTTCTTCCGCCAATGCACCTTCCTTAGATGCCCACTGGAACCCTGC
AACAACAGAATCCTTAATTTCATTCAGGTACTGAACTCCCTTACACATATCAACCACCA