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Detailed information on CNT30315801


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FHW7|SKP1B_ARATH, E-value = 1e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671810Corylus avellanaSetaria viridis11.137.2591.392forward
CNT30535942Corylus avellanaEucalyptus grandis17.3730.986.81144forward
CNT30277964Corylus avellanaChenopodium quinoa15.4421.3785.94128forward
CNT30380933Corylus avellanaManihot esculenta23.0458.4184.29191forward
CNT30628805Corylus avellanaVigna unguiculata18.0928.0990.67150forward
CNT3097013Corylus avellanaSolanum tuberosum12.9124.190.65107forward
CNT30589619Corylus avellanaMusa acuminata16.4153.1285.29136forward
CNT30171771Corylus avellanaTrifolium pratense21.9548.6681.87182forward
CNT30259882Corylus avellanaBrassica rapa16.6536.1384.06138forward
CNT30137317Corylus avellanaLolium perenne14.7240.6786.89122forward
CNT30114991Corylus avellanaEutrema salsugineum22.818.6684.66189forward

Expression of CNT30315801

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTLAKILLVTFGRGIPLSAQSSSIMCLIV*

>peptide 2 (40 aa)
MPNINPQNIPHKPHSTSIIAQYIIQMPTGSPDEPLPLLQG*

>peptide 3 (43 aa)
EGVEMIEGATPVPPSESKYYLHSKSSNFLRKRMCLKQRMITLE*

Sequence

>CNT30315801
TGAAGGCGTTGAAATGATAGAAGGAGCAACACCTGTGCCCCCATCAGAATCCAAATATTATTTACATTCAAAGAGCTCAAACTTTTTGAGAAAGAGAATG
TGCTTGAAACAGAGAATGATAACATTAGAATAACTATGCCTAATATAAACCCACAAAATATACCACATAAACCACATTCAACCTCCATTATCGCCCAATA
CATCATTCAAATGCCCACTGGTTCTCCCGACGAACCTCTTCCTCTTCTTCAGGGGTGAAGTCATTCTTGATGTTAAAGGTCTTGCGGATCTCCTCCGGCG
TCTTCCCCTTGATCATGTCTGCTACAGTCTGGCATGTCAGATCCAGAAGGCCTTGAGATCTTCGTCTGATGTGCGTTCCTCGGGGTTCGCCGCCTCAACG
TGCTTCTTGCAGTATTCGATGACCTTGGCCAAGATCTTGCTCGTCACGTTCGGGAGAGGGATTCCGTTGTCAGCGCAATCGTCCTCAATCATGTGCTTGA
TTGTCTGAGACTCGAGCGCCACGGCCTCGTCGACCTCGAAGGCCTCGCCGTCGGAGCTCTTCAGGGTGATCTTCTTCGACGACGACATGGTGATCTAGCA
AAGACGGCGTTTCGTTCGGAGCGTTCCTGCAAAAGAAAGAACAAACAGAAGCGCAAATGGGGAAAAAATAACCCTAGAAGCCGAGCGCTTGCCTTTCTGG
ACTCTTCCTTTTGCTAAGCGAAAAATCGAAATTGAGACGTTTGGGGGCCTGGGCTCGAGGCCGCTATTTATAGAGTTCTGGCGAGGTGTGTTCCTATGGG
CTAAGGTTTCTTAGGCAAGAAGAGTCGTT